TRIAD	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Triad1_best_proteins.fasta
NEMVE	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Nemve1FilteredModels1.fasta
CAP	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/CAP_FilteredModelsv1.0.aa.fasta
HELRO	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Helro1_FilteredModels3.fasta
LOTGI	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Lotgi1_GeneModels_FilteredModels1_aa.fasta
CAEBR	/home/czmasek/DATA/SEQUENCES/GENOMES/SANGER/brigpep2.pep
CAEEL	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Caenorhabditis_elegans.WB170.45.pep.all.fa
SCHMA	/home/czmasek/DATA/SEQUENCES/GENOMES/TIGR/Smansoni_preliminary_annotation.pep
DAPPU	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/DAPPU_FrozenGeneCatalog_2007_07_03.aa.fasta
ANOGA	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Anopheles_gambiae.AgamP3.45.pep.all.fa
CULPI	/home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/culex_pipiens_3_proteins.fasta
AEDAE	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Aedes_aegypti.AaegL1.45.pep.all.fa
DROPS	/home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/drops_freeze01_genscan.pep.fa
DROME	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Drosophila_melanogaster.BDGP4.3.45.pep.all.fa
APIME	/home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/Amel_release1_OGS_pep.fa
NASVI	/home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/NASVI_protein.fa
BOMMO	/home/czmasek/DATA/SEQUENCES/GENOMES/BGI/SW_ge2k_BGF.pep
TRICA	/home/czmasek/DATA/SEQUENCES/GENOMES/BEETLEBASE/beetlebase-v2-fgenesh-predicted-proteins.fa
STRPU	/home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/STRPU_GLEAN3.fa
OIKDI	/home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/Oikopleura_dioica.SNAP.Od.fasta
CIOIN	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Ciona_intestinalis.JGI2.45.pep.all.fa
CIOSA	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Ciona_savignyi.CSAV2.0.45.pep.all.fa
BRAFL	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Brafl1.fasta
ORYLA	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Oryzias_latipes.MEDAKA1.45.pep.all.fa
GASAC	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Gasterosteus_aculeatus.BROADS1.45.pep.all.fa
DANRE	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Danio_rerio.ZFISH6.45.pep.all.fa
FUGRU	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Takifugu_rubripes.FUGU4.45.pep.all.fa
TETNG	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Tetraodon_nigroviridis.TETRAODON7.45.pep.all.fa
XENTR	/home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/proteins.Xentr4.fasta
CHICK	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Gallus_gallus.WASHUC2.45.pep.all.fa
ORNAN	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Ornithorhynchus_anatinus.OANA5.46.pep.all.fa
MOUSE	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Mus_musculus.NCBIM36.45.pep.all.fa
HUMAN	/home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/Homo_sapiens.NCBI36.50.pep.all.fa
PANTR	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Pan_troglodytes.CHIMP2.1.46.pep.all.fa
RAT	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Rattus_norvegicus.RGSC3.4.46.pep.all.fa
MONDO	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Monodelphis_domestica.BROADO5.46.pep.all.fa
CANFA	/home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Canis_familiaris.BROADD2.45.pep.all.fa
MONBE	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Monbr1_best_proteins.fasta
PHYBL	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Phybl1_best_proteins.fasta
RHIOR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/rhizopus_oryzae_3_proteins.fasta
SCHJP	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/schizosaccharomyces_japonicus_1_proteins.fasta
SCHPO	/home/czmasek/DATA/SEQUENCES/GENOMES/SANGER/pompep.fasta
SCHOT	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/schizosaccharomyces_octosporus_yfs286_2.fasta
ASHGO	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/982.A_gossypii.fasta
CANAL	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/candida_albicans_wo1_1_proteins.fasta
CANGA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Cagl-GL2r2.aa
CANTR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CANTR_candida_tropicalis_3_proteins.fasta
CLALS	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CLALS_candida_lusitaniae_1_proteins.fasta
DEBHA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Deha-GL2r1.aa
KLULA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Klla-GL2r2.aa
KLUWA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/KLUWA_kluyveromyces_waltii.SNAP.aa
LODEL	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/lodderomyces_elongisporus_1_proteins.fasta
PICGU	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/PICGU_candida_guilliermondii_1_proteins.fasta
PICST	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/PICST_FM1.aa.fasta
YEAST	/home/czmasek/DATA/SEQUENCES/GENOMES/STANFORD/yeast_nrpep.fasta
SACCR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACCR_saccharomyces_cerevisiae_rm11-1a_1_proteins.fasta
SACPA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACPA_orf_trans.fasta
SACBA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACBA_orf_trans.fasta
SACCA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACCA_orf_trans.fasta
SACMI	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACMI_orf_trans.fasta
YARLI	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Yali-GL2r2.aa
ASPCL	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPCL_1_proteins.fasta
ASPFL	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPFL_2_proteins.fasta
ASPFU	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_fumigatus_proteins.fasta
ASPNG	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Aspni1_FilteredModels1.aa.fasta
ASPOR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPOR_1_proteins.fasta
ASPTE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_terreus_1_proteins.fasta
COCIM	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/COCIM_rs_2_proteins.fasta
NEOFI	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/NEOFI_proteins.fasta
EMENI	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_nidulans_1_proteins.fasta
AJECA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/AJECA_histoplasma_capsulatum_1_proteins.fasta
UNCRE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/UNCRE_uncinocarpus_reesii_2_proteins.fasta
PARBR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/paracoccidioides_brasiliensis_pb03_1_proteins.fasta
BOTFB	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/BOTFB_botrytis_cinerea_1_proteins.fasta
SCLSC	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SCLSC_sclerotinia_sclerotiorum_1_proteins.fasta
CHAGB	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/chaetomium_globosum_1_proteins.fasta
FUSOX	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/fusarium_oxysporum_f._sp._lycopersici_2_proteins.fasta
GIBMO	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/GIBMO_fusarium_verticillioides_3_proteins.fasta
GIBZE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/fusarium_graminearum_3_proteins.fasta
MAGGR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/magnaporthe_grisea_5_proteins.fasta
FUSSH	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Necha2_best_proteins.fasta
NEUCR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/neurospora_crassa_7_proteins.fasta
PODAN	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/cds_podo_v1
TRIRE	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/TRIRE_proteins.FilteredModelsV2.0.fasta
TRIVE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/TRIVE_proteins.FM3.fasta
TRIAT	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Tatroviride.FilteredModels4.aa.fasta
CRYPA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Cparasitica.FilteredModels.aa.fasta
PHANO	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/stagonospora_nodorum_1_proteins.fasta
MYCFI	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/MYCFI_FilteredModelsv1.0.aa.fasta
MYCGR	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/MYCGR_proteins.FilteredModels1.fasta
PYRTR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/pyrenophora_tritici-repentis_1_proteins.fasta
COCHE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CocheC5_1_GeneModels_FilteredModels1_aa.fasta
COPCI	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/coprinus_cinereus_1_proteins.fasta
CRYNE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/cryptococcus_neoformans_1_proteins.fasta
LACBI	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/LACBI_BestModelsv1.aa.fasta
PHACH	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/PHACH_BestModels2.1.prot
POSPL	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Pospl1_FilteredModels2_proteins.fasta
SPORO	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Sroseus.FilteredModels1.aa.fasta
MELLP	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Mlaricis_populina.FilteredModels3.aa.fasta
PUCGR	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/PUCGR_puccinia_graminis_f._sp._tritici_2_proteins.fasta
USTMA	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ustilago_maydis_1_proteins.fasta
BATDE	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/batrachochytrium_dendrobatidis_1_proteins.fasta
ENCCU	/home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ENCCU.fasta
DICDI	/home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/dicty_primary_protein
DICPU	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Dicpu1_best_proteins.fasta
ENTHI	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/EHA1.pep
PHYPA	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Phypa1_1.FilteredModels.fasta
SELMO	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Selmo1_GeneModels_FilteredModels3_aa.fasta
ARATH	/home/czmasek/DATA/SEQUENCES/GENOMES/TAIR/TAIR7_pep_20070425
ARALY	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Araly1_GeneModels_FilteredModels6_aa.fasta
VITVI	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Vitis_vinifera_peptide_v1.fa
POPTR	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Poptr1_1.JamboreeModels.fasta
ORYSA	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/osa1_5_chr1_12_tigr.fasta
ORYSJ	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/os_japonica.cds-ami.300503
SORBI	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Sorbi1_GeneModels_FilteredModels6_aa.fasta
OSTLU	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/OSTLU.FM.aa.fasta
OSTTA	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/O.tauri.FM.aa.fasta
OSTRC	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/OstRCC809.FM1.aa.fasta
MICPU	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/MicromonasCCMP1545.FrozenGeneCatalog_20080206.aa.fasta
MIC99	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/MicromonasRCC299.FrozenGeneCatalog_20080206.aa.fasta
CHLRE	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Chlre3_1.GeneCatalogProteins.6JUL06.fasta
VOLCA	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/VOLCA.proteins.FilteredModels2.fasta
CHLSP	/home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Chlorella_NC64A.best_proteins.fasta
CYAME	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/CYAME_cds.fasta
PHATR	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Phatr2_geneModels_FilteredModels2_aa.fasta
THAPS	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Thaps3_geneModels_FilteredModels2_aa.fasta
AURAN	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Auran1_FilteredModels3.fasta
PHYSO	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.FM_Physo1_1.fasta
PHYRM	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/proteins.FM_Phyra1_1.fasta
PHYIN	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/phytophthora_infestans_1_proteins.fasta
PHYCP	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PhycaF7_best_proteins.fasta
TETTH	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TTA1_08302006.pep
PARTE	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Paramecium_peptide_v1.fa
CRYHO	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/ChominisAnnotatedProtein.fsa
CRYPV	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/CparvumAnnotatedProtein.fsa
TOXGO	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TgondiiAnnotatedProteins_toxoDB-4.2.fasta
EIMTE	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/GeneDB_Etenella_Proteins
PLACH	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PchabaudiAnnotatedProteins_plasmoDB-5.3.fasta
PLAFA	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PfalciparumAnnotatedProteins_plasmoDB-5.3.fasta
PLAYO	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PLAYO_PYA1.pep
PLAVI	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PvivaxAnnotatedProteins_PlasmoDB-5.5.fasta
THEPA	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/THEPA.fasta
THEAN	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TANN.GeneDB.pep
EMIHU	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Emihu1_best_proteins.fasta
TRYBB	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TBA1.pep
LEIMA	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/LEIMA_GeneDB_Protein_database_110506
GIALA	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/GlambliaAnnotatedProteins_GiardiaDB-1.0.fasta
TRIVA	/home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TvaginalisAnnotatedProteins_TrichDB-1.0.fasta
NAEGR	/home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Naegr1_best_proteins.fasta
SULSO	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULSO_AE006641.faa
SULTO	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULTO_BA000023.faa
SULAC	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULAC_CP000077.faa
METS5	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METS5_NC_009440.faa
AERPE	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/AERPE_BA000002.faa
HYPBU	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HYPBU_NC_008818.faa
IGNH4	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/IGNH4_NC_009776.faa
STAMF	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/STAMF_NC_009033.faa
PYRAE	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAE_AE009441.faa
PYRAR	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAR_NC_009376.faa
PYRCJ	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRCJ_NC_009073.faa
PYRIL	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRIL_NC_008701.faa
CALMA	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/CALMA_NC_009954.faa
THEPD	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEPD_NC_008698.faa
THENV	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THENV_NC_010525.faa
NITMA	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NITMA_NC_010085.faa
METJA	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METJA_m_jannaschii_dsm2661.pep
METMP	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMP_BX950229.faa
META3	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/META3_NC_009635.faa
METVS	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METVS_NC_009634.faa
PYRFU	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRFU_AE009950.faa
PYRAB	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAB_AL096836.faa
PYRHO	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRHO_BA000001.faa
THEKO	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEKO_AP006878.faa
THEON	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEON_NC_011529.faa
METMA	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMA_AE008384.faa
METAC	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METAC_AE010299.faa
METBF	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METBF_CP000099.faa
METBU	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METBU_CP000300.faa
METTP	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METTP_NC_008553.faa
METHU	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METHU_CP000254.faa
METLZ	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METLZ_NC_008942.faa
METMJ	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMJ_NC_009051.faa
METB6	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METB6_NC_009712.faa
NATPH	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NATPH_CR936257.faa
HALSP	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALSP_AE004437.faa
HALS3	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALS3.fasta
HALMA	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALMA_AY596297.faa
HALWD	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALWD_AM180088.faa
ARCFU	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/ARCFU_AE000782.faa
THEVO	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEVO_BA000011.faa
THEAC	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEAC_AL139299.faa
PICTO	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PICTO_AE017261.faa
METTH	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METTH_AE000666.faa
METST	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METST_CP000102.faa
METS3	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METS3_NC_009515.faa
METKA	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METKA_AE009439.faa
KORCR	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/KORCR_NC_010482.faa
NANEQ	/home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NANEQ_AE017199.faa
BACSU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACSU_SLR16.1_prot.txt
BACAN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACAN_ames.pep
GEOKA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOKA_BA000043.faa
BACHD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACHD_NC_002570.faa
LISMO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LISMO_4b_h7858.pep
STAAU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STAAU_AJ938182.faa
CLOP1	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CLOP1_c_perfringens_atcc13124.pep
DESHA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESHA_AP008230.faa
CARHZ	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CARHZ_2901.pep
THETN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THETN_AE008691.faa
LACAC	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LACAC_CP000033.faa
STRPN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRPN_s_pneumoniae_tigr4.pep
STRPY	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRPY_AE009949.faa
LACLA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LACLA_NC_002662.faa
MESFL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MESFL_AE017263.faa
MYCPN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCPN_U00089.faa
MYCGE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCGE_g_37.pep
UREPA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/UREPA_NC_010503.faa
PELUB	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PELUB_CP000084.faa
RICTY	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RICTY_AE017197.faa
CAUCR	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CAUCR_c_crescentus_cb15.pep
ROSDO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ROSDO_CP000362.faa
RHOS1	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOS1.faa
BRAJA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BRAJA_BA000040.faa
SINME	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SINME.faa
RHIEC	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHIEC.faa
AGRT5	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AGRT5.faa
BARHE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BARHE_BX897699.faa
RHOPT	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOPT_NC_011004.faa
RHORU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHORU_CP000230.faa
ACICY	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACICY.fasta
THIDE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THIDE_CP000116.faa
NITMU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITMU_CP000103.faa
NITEU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITEU_AL954747.faa
DECAR	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DECAR_CP000089.faa
RALME	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RALME.faa
RHOFT	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOFT_NC_007901.faa
NEIME	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NEIME_AL157959.faa
DESDE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESDE_CP000112.faa
GEOME	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOME_CP000148.faa
GEOSL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOSL_AE017180.faa
ANADE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ANADE_CP000251.faa
MYXXA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYXXA_CP000113.faa
SYNAS	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNAS_CP000252.faa
DESOL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESOL_NC_009943.faa
DESPS	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESPS.faa
HELPH	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HELPH_CP000241.faa
CAMJE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CAMJE_c_jejuni_rm1221.pep
THIDN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THIDN_CP000153.faa
NITSB	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITSB_NC_009662.faa
SULNB	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SULNB_NC_009663.faa
ECOLI	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ECOLI_U00096.faa
ECO57	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ECO57_AE005174.faa
PHOLU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PHOLU_BX470251.faa
SALTY	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SALTY.faa
SHIFL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SHIFL_AE014073.faa
YERPE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/YERPE.faa
PASMU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PASMU_AE004439.faa
HAEIN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HAEIN_kw20_rd.pep
LEGPN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LEGPN.faa
THICR	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THICR_CP000109.faa
PHOPR	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PHOPR_CR354531.faa
VIBCH	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/VIBCH_el_tor_n16961.pep
PSEF5	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEF5_pf_5.pep
PSEPF	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEPF_CP000094.faa
PSEAE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEAE_AE004091.faa
CHRSD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHRSD_CP000285.faa
XANAC	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/XANAC_AE008923.faa
XYLFT	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/XYLFT_AE009442.faa
ACIFE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACIFE_atcc_23270.pep
NITOC	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITOC.faa
ALHEH	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ALHEH_NC_008340.faa
HALHL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HALHL_NC_008789.faa
IDILO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/IDILO_AE017340.faa
SHEDO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SHEDO_CP000302.faa
FRATU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FRATU_AJ749949.faa
BIFLO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BIFLO_AE014295.faa
CORJK	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CORJK_CR931997.faa
MYCTU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCTU_m_tuberculosis_cdc1551.pep
STRCO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRCO_48_82.faa
RHOR1	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOR1.faa
MYCLE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCLE_NC_002677.faa
THEFY	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEFY_CP000088.faa
KOCRD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/KOCRD_NC_010617.faa
KINRD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/KINRD
RUBXD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RUBXD_CP000386.faa
AQUAE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AQUAE_AE000657.faa
HYDY0	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HYDY0_NC_011126.faa
SULYO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SULYO_NC_010730.faa
THEMA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEMA_t_maritima_msb8.pep
THELT	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THELT_NC_009828.faa
FERNB	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FERNB_NC_009718.faa
SALRD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SALRD_s_ruber.pep
CYTH3	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CYTH3_CP000383.faa
BACFR	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACFR_AP006841.faa
BACTN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACTN_AE015928.faa
PORGI	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PORGI_w83.pep
FLAJO	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FLAJO_NC_009441.faa
GRAFK	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GRAFK_NC_008571.faa
CHLTE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLTE_c_tepidum_tls.pep
CHLP8	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLP8_NC_011027.faa
CHLTA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLTA_NC_011026.faa
CHLPB	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLPB_NC_010831.faa
PROVI	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROVI_NC_009337.faa
CHLCH	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLCH_CP000108.faa
PELLU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PELLU_CP000096.faa
PROAE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROAE
DEHE1	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEHE1_d_ethenogenes_195.pep
DEHSB	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEHSB_NC_009455.faa
CHLAU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLAU_NC_010175.faa
ROSCA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ROSCA_NC_009767.faa
HERAU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HERAU.faa
DEIRA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEIRA_d_radiodurans_r1.pep
DEIGD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEIGD_58_59_56.faa
THETH	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THETH_AE01722x.faa
SYNEL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNEL_AP008231.faa
SYNS3	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNS3_synechococcus_cc9311.pep
CYAA2	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CYAA2
MICAN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MICAN_NC_010296.faa
SYNY3	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNY3
THEEL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEEL_NC_004113.faa
NOSS7	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NOSS7_BA000019.faa
NOSP7	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NOSP7
ANAVA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ANAVA.faa
GLOVI	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GLOVI_NC_005125.faa
PROMA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMA_NC_008816.faa
PROMP	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMP_NC_005072.faa
PROMM	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMM_NC_005042.faa
TRIER	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/TRIER_NC_008312.faa
ACAMR	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACAMR.fasta
BORBU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BORBU_b_burgdorferi_b31.pep
TREPA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/TREPA_t_pallidum_nichols.pep
LEPIC	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LEPIC
CHLPN	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLPN_c_pneumoniae_ar39.pep
CHLMU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLMU_NC_002620.faa
CHLFF	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLFF_AP006861.faa
FUSNU	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FUSNU_AE009951.faa
SOLUS	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SOLUS_NC_008536.faa
ACIBL	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACIBL_NC_008009.faa
RHOBA	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOBA_NC_005027.faa
OPITE	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/OPITE_NC_010571.faa
METI4	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/METI4_NC_010794.faa
AKKM8	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AKKM8_NC_010655.faa
DICT6	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DICT6_NC_011297.faa
THEYD	/home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEYD_NC_011296.faa