// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.go; import java.util.regex.Matcher; import java.util.regex.Pattern; public class GoId implements Comparable { private static final int SIZE = 10; private static final String GO_PREFIX = "GO:"; private static final String GO_FORMAT = GO_PREFIX + "\\d{7}"; private static final Pattern GO_PATTERN = Pattern.compile( GO_FORMAT ); private final String _id; public GoId( final String id ) { if ( id.length() != SIZE ) { throw new IllegalArgumentException( "unexpected format for GO id: " + id ); } final Matcher m = GO_PATTERN.matcher( id ); if ( !m.matches() ) { throw new IllegalArgumentException( "unexpected format for GO id: " + id ); } _id = id.substring( 3 ); } @Override public int compareTo( final GoId id ) { return getId().compareTo( id.getId() ); } @Override public boolean equals( final Object o ) { if ( this == o ) { return true; } else if ( o == null ) { throw new IllegalArgumentException( "attempt to check go id equality to null" ); } else if ( o.getClass() != this.getClass() ) { throw new IllegalArgumentException( "attempt to check go id equality to " + o + " [" + o.getClass() + "]" ); } else { return getId().equals( ( ( GoId ) o ).getId() ); } } public String getId() { return GO_PREFIX + _id; } @Override public int hashCode() { return getId().hashCode(); } @Override public String toString() { return getId(); } }