// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.go; public class PfamToGoMapping implements Mapping { private final String _pfam_domain_id; private final GoId _go_id; public PfamToGoMapping( final String pfam_domain_id, final GoId go_id ) { _pfam_domain_id = pfam_domain_id; _go_id = go_id; } @Override public int compareTo( final Mapping m ) { if ( this == m ) { return 0; } return getKey().compareTo( ( String ) m.getKey() ); } /** * Based on key and value. * * */ @Override public boolean equals( final Object o ) { if ( this == o ) { return true; } else if ( o == null ) { throw new IllegalArgumentException( "attempt to check pfam to go mapping equality to null" ); } else if ( o.getClass() != this.getClass() ) { throw new IllegalArgumentException( "attempt to check pfam to go mapping equality to " + o + " [" + o.getClass() + "]" ); } else { return getKey().equals( ( ( PfamToGoMapping ) o ).getKey() ) && getValue().equals( ( ( PfamToGoMapping ) o ).getValue() ); } } @Override public String getKey() { return _pfam_domain_id; } @Override public GoId getValue() { return _go_id; } @Override public String toString() { final StringBuffer sb = new StringBuffer(); sb.append( getKey().toString() ); sb.append( " > " ); sb.append( getValue().toString() ); return sb.toString(); } }