// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.io.parsers.nexus; public final class NexusConstants { public final static String NEXUS = "#NEXUS"; public final static String BEGIN_TAXA = "Begin Taxa;"; public final static String BEGIN_TREES = "Begin Trees;"; public final static String TREE = "Tree"; public final static String DIMENSIONS = "Dimensions"; public final static String NTAX = "NTax"; public final static String NCHAR = "NChar"; public final static String TAXLABELS = "TaxLabels"; public final static String CHARSTATELABELS = "CharStateLabels"; public final static String END = "End;"; public final static String MATRIX = "Matrix"; public final static String BEGIN_CHARACTERS = "Begin Characters;"; public final static String FORMAT = "Format"; public final static String DATATYPE = "DataType"; public final static String STANDARD = "Standard"; public final static String SYMBOLS = "Symbols"; public static final String TRANSLATE = "Translate"; public static final String UTREE = "UTREE"; }