// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.io.parsers.phyloxml.data; import java.math.BigDecimal; import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException; import org.forester.io.parsers.phyloxml.PhyloXmlMapping; import org.forester.io.parsers.phyloxml.XmlElement; import org.forester.phylogeny.data.Date; import org.forester.phylogeny.data.PhylogenyData; import org.forester.util.ForesterUtil; public class DateParser implements PhylogenyDataPhyloXmlParser { private static final PhylogenyDataPhyloXmlParser _instance; static { try { _instance = new DateParser(); } catch ( final Throwable e ) { throw new RuntimeException( e.getMessage() ); } } private DateParser() { } @Override public PhylogenyData parse( final XmlElement element ) throws PhyloXmlDataFormatException { String unit = ""; if ( element.isHasAttribute( PhyloXmlMapping.CLADE_DATE_UNIT ) ) { unit = element.getAttribute( PhyloXmlMapping.CLADE_DATE_UNIT ); } String val = null; String min = null; String max = null; String desc = ""; for( int j = 0; j < element.getNumberOfChildElements(); ++j ) { final XmlElement e = element.getChildElement( j ); if ( e.getQualifiedName().equals( PhyloXmlMapping.CLADE_DATE_VALUE ) ) { val = e.getValueAsString(); } else if ( e.getQualifiedName().equals( PhyloXmlMapping.CLADE_DATE_MIN ) ) { min = e.getValueAsString(); } else if ( e.getQualifiedName().equals( PhyloXmlMapping.CLADE_DATE_MAX ) ) { max = e.getValueAsString(); } else if ( e.getQualifiedName().equals( PhyloXmlMapping.CLADE_DATE_DESC ) ) { desc = e.getValueAsString(); } } BigDecimal val_bd = null; BigDecimal min_bd = null; BigDecimal max_bd = null; if ( !ForesterUtil.isEmpty( val ) ) { val_bd = new BigDecimal( val ); } if ( !ForesterUtil.isEmpty( min ) ) { min_bd = new BigDecimal( min ); } if ( !ForesterUtil.isEmpty( max ) ) { max_bd = new BigDecimal( max ); } return new Date( desc, val_bd, min_bd, max_bd, unit ); } public static PhylogenyDataPhyloXmlParser getInstance() { return _instance; } }