// $Id: // forester -- software libraries and applications // for genomics and evolutionary biology research. // // Copyright (C) 2010 Christian M Zmasek // Copyright (C) 2010 Sanford-Burnham Medical Research Institute // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.io.parsers.phyloxml.data; import java.util.ArrayList; import java.util.List; import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException; import org.forester.io.parsers.phyloxml.PhyloXmlMapping; import org.forester.io.parsers.phyloxml.XmlElement; import org.forester.phylogeny.data.PhylogenyData; import org.forester.phylogeny.data.Point; import org.forester.phylogeny.data.Polygon; public class PolygonParser implements PhylogenyDataPhyloXmlParser { private static final PhylogenyDataPhyloXmlParser _instance; static { try { _instance = new PolygonParser(); } catch ( final Throwable e ) { throw new RuntimeException( e.getMessage() ); } } private PolygonParser() { } @Override public PhylogenyData parse( final XmlElement element ) throws PhyloXmlDataFormatException { final List points = new ArrayList(); for( int j = 0; j < element.getNumberOfChildElements(); ++j ) { final XmlElement e = element.getChildElement( j ); if ( e.getQualifiedName().equals( PhyloXmlMapping.POINT ) ) { points.add( ( Point ) PointParser.getInstance().parse( e ) ); } } return new Polygon( points ); } public static PhylogenyDataPhyloXmlParser getInstance() { return _instance; } }