// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.phylogeny.data; import java.awt.Color; import java.io.IOException; import java.io.Writer; import org.forester.io.parsers.phyloxml.PhyloXmlMapping; import org.forester.util.ForesterUtil; public class BranchColor implements PhylogenyData { private Color _color; public BranchColor() { _color = null; } public BranchColor( final Color color ) { _color = color; } @Override public StringBuffer asSimpleText() { return new StringBuffer( getValue().toString() ); } @Override public StringBuffer asText() { return new StringBuffer( getValue().toString() ); } @Override /** * Not a deep copy. * */ public PhylogenyData copy() { final BranchColor bc = new BranchColor(); bc.setValue( getValue() ); return bc; } public Color getValue() { return _color; } @Override public boolean isEqual( final PhylogenyData data ) { return getValue().equals( ( ( BranchColor ) data ).getValue() ); } public void setValue( final Color color ) { _color = color; } @Override public StringBuffer toNHX() { throw new UnsupportedOperationException(); } @Override public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException { writer.write( ForesterUtil.LINE_SEPARATOR ); writer.write( indentation ); PhylogenyDataUtil.appendOpen( writer, PhyloXmlMapping.COLOR ); PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.COLOR_RED, getValue().getRed() + "", indentation ); PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.COLOR_GREEN, getValue().getGreen() + "", indentation ); PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.COLOR_BLUE, getValue().getBlue() + "", indentation ); if ( getValue().getAlpha() != 255 ) { PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.COLOR_ALPHA, getValue().getAlpha() + "", indentation ); } writer.write( ForesterUtil.LINE_SEPARATOR ); writer.write( indentation ); PhylogenyDataUtil.appendClose( writer, PhyloXmlMapping.COLOR ); } @Override public String toString() { return asText().toString(); } }