// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // Copyright (C) 2000-2001 Washington University School of Medicine // and Howard Hughes Medical Institute // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.phylogeny.data; import java.io.IOException; import java.io.Writer; import java.math.BigDecimal; import org.forester.io.parsers.phyloxml.PhyloXmlMapping; import org.forester.util.ForesterUtil; public class Date implements PhylogenyData { private String _desc; private BigDecimal _value; private BigDecimal _min; private BigDecimal _max; private String _unit; public Date() { _desc = ""; _value = null; _min = null; _max = null; _unit = ""; } public Date( final String desc ) { if ( desc == null ) { throw new IllegalArgumentException( "illegaly empty of null fields in constructor" ); } _desc = desc; _value = null; _min = null; _max = null; _unit = ""; } public Date( final String desc, final BigDecimal value, final BigDecimal min, final BigDecimal max, final String unit ) { if ( ( desc == null ) || ( unit == null ) ) { throw new IllegalArgumentException( "illegaly empty of null fields in constructor" ); } _desc = desc; _value = value; _min = min; _max = max; _unit = unit; } @Override public StringBuffer asSimpleText() { if ( getValue() != null ) { return new StringBuffer( getDesc() + " [" + getValue().toPlainString() + " " + getUnit() + "]" ); } else { return new StringBuffer( getDesc() ); } } @Override public StringBuffer asText() { return asSimpleText(); } @Override public PhylogenyData copy() { return new Date( getDesc(), getValue() == null ? null : new BigDecimal( getValue().toPlainString() ), getMin() == null ? null : new BigDecimal( getMin().toPlainString() ), getMax() == null ? null : new BigDecimal( getMax().toPlainString() ), getUnit() ); } public String getDesc() { return _desc; } public BigDecimal getMax() { return _max; } public BigDecimal getMin() { return _min; } public String getUnit() { return _unit; } public BigDecimal getValue() { return _value; } @Override public boolean isEqual( final PhylogenyData data ) { throw new UnsupportedOperationException(); } public void setDesc( final String desc ) { _desc = desc; } public void setMax( final BigDecimal max ) { _max = max; } public void setMin( final BigDecimal min ) { _min = min; } public void setUnit( final String unit ) { _unit = unit; } public void setValue( final BigDecimal value ) { _value = value; } @Override public StringBuffer toNHX() { throw new UnsupportedOperationException(); } @Override public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException { writer.write( ForesterUtil.LINE_SEPARATOR ); writer.write( indentation ); PhylogenyDataUtil.appendOpen( writer, PhyloXmlMapping.CLADE_DATE, PhyloXmlMapping.CLADE_DATE_UNIT, getUnit() ); if ( !ForesterUtil.isEmpty( getDesc() ) ) { PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.CLADE_DATE_DESC, getDesc(), indentation ); } if ( getValue() != null ) { PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.CLADE_DATE_VALUE, getValue().toPlainString(), indentation ); } if ( getMin() != null ) { PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.CLADE_DATE_MIN, getMin().toPlainString(), indentation ); } if ( getMax() != null ) { PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.CLADE_DATE_MAX, getMax().toPlainString(), indentation ); } writer.write( ForesterUtil.LINE_SEPARATOR ); writer.write( indentation ); PhylogenyDataUtil.appendClose( writer, PhyloXmlMapping.CLADE_DATE ); } @Override public String toString() { return asSimpleText().toString(); } }