// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: www.phylosoft.org package org.forester.phylogeny.data; import java.awt.Color; import java.io.IOException; import java.io.Writer; import java.util.ArrayList; import java.util.List; import org.forester.phylogeny.data.Property.AppliesTo; public class NodeVisualization implements PhylogenyData { private NodeShape _shape; private NodeFill _fill_type; private Color _border_color; private Color _fill_color; private double _size; private double _transparancy; public NodeVisualization() { init(); } public NodeVisualization( final NodeShape shape, final NodeFill fill_type, final Color border_color, final Color fill_color, final double size, final double transparancy ) { setShape( shape ); setFillType( fill_type ); setBorderColor( border_color ); setFillColor( fill_color ); setSize( size ); setTransparancy( transparancy ); } @Override public StringBuffer asSimpleText() { return asText(); } @Override public StringBuffer asText() { final StringBuffer sb = new StringBuffer(); return sb; } @Override public PhylogenyData copy() { return new NodeVisualization( getShape(), getFillType(), getBorderColor() != null ? new Color( getBorderColor().getRed(), getBorderColor() .getGreen(), getBorderColor().getBlue() ) : null, getFillColor() != null ? new Color( getFillColor().getRed(), getFillColor() .getGreen(), getFillColor().getBlue() ) : null, getSize(), getTransparancy() ); } public Color getBorderColor() { return _border_color; } public Color getFillColor() { return _fill_color; } public NodeFill getFillType() { return _fill_type; } public NodeShape getShape() { return _shape; } public double getSize() { return _size; } public double getTransparancy() { return _transparancy; } private void init() { setShape( NodeShape.CIRCLE ); setFillType( NodeFill.SOLID ); setBorderColor( null ); setFillColor( null ); setSize( 0 ); setTransparancy( 1 ); } @Override public boolean isEqual( final PhylogenyData data ) { throw new UnsupportedOperationException(); } public void setBorderColor( final Color border_color ) { _border_color = border_color; } public void setFillColor( final Color fill_color ) { _fill_color = fill_color; } public void setFillType( final NodeFill fill_type ) { _fill_type = fill_type; } public void setShape( final NodeShape shape ) { _shape = shape; } public void setSize( final double size ) { _size = size; } public void setTransparancy( final double transparancy ) { _transparancy = transparancy; } @Override public StringBuffer toNHX() { throw new UnsupportedOperationException(); } @Override public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException { throw new UnsupportedOperationException(); } @Override public String toString() { return asText().toString(); } public enum NodeFill { NONE, GRADIENT, SOLID } public enum NodeShape { CIRCLE, RECTANGLE } private List toProperties() { final List properties = new ArrayList(); properties.add( new Property( SIZE_REF, String.valueOf( getSize() ), "", SIZE_TYPE, AppliesTo.NODE ) ); properties.add( new Property( SIZE_REF, String.valueOf( getShape() ), "", SIZE_TYPE, AppliesTo.NODE ) ); properties.add( new Property( SIZE_REF, String.valueOf( getFillType() ), "", SIZE_TYPE, AppliesTo.NODE ) ); properties.add( new Property( SIZE_REF, String.valueOf( getTransparancy() ), "", SIZE_TYPE, AppliesTo.NODE ) ); properties.add( new Property( SIZE_REF, String.valueOf( getFillColor() ), "", SIZE_TYPE, AppliesTo.NODE ) ); properties.add( new Property( SIZE_REF, String.valueOf( getBorderColor() ), "", SIZE_TYPE, AppliesTo.NODE ) ); return properties; } public static final String SIZE_REF = "aptx_visualiation:node_sise"; public static final String SIZE_TYPE = "xsd:decimal"; }