// $Id: // Exp $ // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.surfacing; import java.util.HashMap; import java.util.Map; import org.forester.protein.BasicDomain; import org.forester.protein.BinaryDomainCombination; public class AdjactantDirectedBinaryDomainCombination extends BasicBinaryDomainCombination { final private static Map ADDC_POOL = new HashMap(); private AdjactantDirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) { super(); if ( ( n_terminal == null ) || ( c_terminal == null ) ) { throw new IllegalArgumentException( "attempt to create binary domain combination using null" ); } _id0 = BasicDomain.obtainIdAsShort( n_terminal ); _id1 = BasicDomain.obtainIdAsShort( c_terminal ); } public final static AdjactantDirectedBinaryDomainCombination obtainInstance( final String ids ) { if ( ids.indexOf( BinaryDomainCombination.SEPARATOR ) < 1 ) { throw new IllegalArgumentException( "Unexpected format for binary domain combination [" + ids + "]" ); } final String[] ids_ary = ids.split( BinaryDomainCombination.SEPARATOR ); if ( ids_ary.length != 2 ) { throw new IllegalArgumentException( "Unexpected format for binary domain combination [" + ids + "]" ); } return AdjactantDirectedBinaryDomainCombination.obtainInstance( ids_ary[ 0 ], ids_ary[ 1 ] ); } public final static AdjactantDirectedBinaryDomainCombination obtainInstance( final String n_terminal, final String c_terminal ) { final int code = calcCode( BasicDomain.obtainIdAsShort( n_terminal ), BasicDomain.obtainIdAsShort( c_terminal ) ); if ( ADDC_POOL.containsKey( code ) ) { return ADDC_POOL.get( code ); } else { final AdjactantDirectedBinaryDomainCombination dc = new AdjactantDirectedBinaryDomainCombination( n_terminal, c_terminal ); ADDC_POOL.put( code, dc ); if ( VERBOSE && ( ( ADDC_POOL.size() % 100 ) == 0 ) ) { System.out.println( " addc pool size: " + ADDC_POOL.size() ); } return dc; } } }