// $Id: // // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.surfacing; import org.forester.util.ForesterUtil; public class SurfacingConstants { public static final String AMIGO_LINK = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query="; public static final String EOL_LINK = "http://www.eol.org/search?q="; public static final String GO_LINK = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query="; public static final String GOOGLE_SCHOLAR_SEARCH = "http://scholar.google.com/scholar?q="; public static final String GOOGLE_WEB_SEARCH_LINK = "http://www.google.com/search?q="; public static final String NL = ForesterUtil.LINE_SEPARATOR; public static final String NONE = "[none]"; public static final String PFAM_FAMILY_ID_LINK = "http://pfam.xfam.org/family/"; public static final String UNIPROT_TAXONOMY_ID_LINK = "http://www.uniprot.org/taxonomy/"; static final boolean PRINT_MORE_DOM_SIMILARITY_INFO = false; static final boolean SECONDARY_FEATURES_ARE_SCOP = true; static final String SECONDARY_FEATURES_SCOP_LINK = "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?key="; }