// $Id: // // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.util; public class AsciiHistogram { final private DescriptiveStatistics _stats; final private String _title; public AsciiHistogram( final DescriptiveStatistics stats ) { _stats = stats; _title = ""; } public AsciiHistogram( final DescriptiveStatistics stats, final String title ) { _stats = stats; _title = title; } private void drawToStringBuffer( final double min, final char symbol, final int size, final int digits, final StringBuffer sb, final int[] bins, final int max_count, final int under, final int over, final double binning_factor, final String indent ) { final double draw_factor = ( double ) max_count / size; final int counts_size = ForesterUtil.roundToInt( Math.log10( max_count ) ) + 1; if ( !ForesterUtil.isEmpty( getTitle() ) ) { sb.append( getTitle() ); sb.append( ForesterUtil.LINE_SEPARATOR ); sb.append( ForesterUtil.LINE_SEPARATOR ); } if ( under > 0 ) { if ( !ForesterUtil.isEmpty( indent ) ) { sb.append( indent ); } sb.append( "[" + under + "] " ); sb.append( ForesterUtil.LINE_SEPARATOR ); } for( int i = 0; i < bins.length; ++i ) { final int count = bins[ i ]; final double label = ForesterUtil.round( ( min + ( i * ( 1.0 / binning_factor ) ) ), digits ); if ( !ForesterUtil.isEmpty( indent ) ) { sb.append( indent ); } sb.append( ForesterUtil.pad( label + "", digits, '0', false ) ); sb.append( " [" + ForesterUtil.pad( count + "", counts_size, ' ', true ) + "] " ); final int s = ForesterUtil.roundToInt( count / draw_factor ); for( int j = 0; j < s; ++j ) { sb.append( symbol ); } sb.append( ForesterUtil.LINE_SEPARATOR ); } if ( over > 0 ) { if ( !ForesterUtil.isEmpty( indent ) ) { sb.append( indent ); } sb.append( "[" + over + "] " ); sb.append( ForesterUtil.LINE_SEPARATOR ); } } private DescriptiveStatistics getDescriptiveStatistics() { return _stats; } private String getTitle() { return _title; } public StringBuffer toStringBuffer( final double min, final double max, final int number_of_bins, final char symbol, final int size, final int digits, final String indent ) { if ( min >= max ) { throw new IllegalArgumentException( "min [" + min + "] is larger than or equal to max [" + max + "]" ); } if ( number_of_bins < 3 ) { throw new IllegalArgumentException( "number of bins is smaller than 3" ); } if ( size < 2 ) { throw new IllegalArgumentException( "size is smaller than 2" ); } final StringBuffer sb = new StringBuffer(); int max_count = 0; final double binning_factor = number_of_bins / ( max - min ); final int[] bins = BasicDescriptiveStatistics .performBinning( getDescriptiveStatistics().getDataAsDoubleArray(), min, max, number_of_bins ); for( final int bin : bins ) { if ( bin > max_count ) { max_count = bin; } } drawToStringBuffer( min, symbol, size, digits, sb, bins, max_count, 0, 0, binning_factor, indent ); return sb; } public StringBuffer toStringBuffer( final int bins, final char symbol, final int size, final int digits, final String indent ) { return toStringBuffer( getDescriptiveStatistics().getMin(), getDescriptiveStatistics().getMax(), bins, symbol, size, digits, indent ); } public StringBuffer toStringBuffer( final int bins, final char symbol, final int size, final int digits ) { return toStringBuffer( getDescriptiveStatistics().getMin(), getDescriptiveStatistics().getMax(), bins, symbol, size, digits, null ); } }