// $Id: // FORESTER -- software libraries and applications // for evolutionary biology research and applications. // // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved // // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either // version 2.1 of the License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com // WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.util; import java.util.List; public interface DescriptiveStatistics { public final static String PLUS_MINUS = "" + ( char ) 177; public abstract void addValue( final double d ); public abstract double arithmeticMean(); public abstract String asSummary(); /** * Computes the coefficient of variation. Used to express standard deviation * independent of units of measure. * * @return */ public abstract double coefficientOfVariation(); public abstract double[] getDataAsDoubleArray(); public abstract List getData(); public abstract double getMax(); public abstract double getMin(); public abstract int getN(); public abstract double getSum(); public abstract String getSummaryAsString(); public abstract double getValue( final int index ); public abstract double median(); public abstract double midrange(); /** * Determines relationship between the mean and the median. This reflects * how the data differs from the normal bell shaped distribution. * * @return */ public abstract double pearsonianSkewness(); public abstract double sampleStandardDeviation(); public abstract double sampleStandardUnit( final double value ); public abstract double sampleVariance(); public abstract double standardErrorOfMean(); public abstract double sumDeviations(); @Override public abstract String toString(); public abstract void setDescription( final String desc ); public abstract String getDescription(); }