Query sequence: 1 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A 1/1 16 57 .. 1 41 [] 23.2 0.01 // hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: 2 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 3 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A 1/1 16 57 .. 1 41 [] 23.2 0.01 A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 4 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- B 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 // hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: 5 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 // hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: 6 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C 1/1 16 57 .. 1 41 [] 23.2 0.01 Y 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 7 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C 1/1 16 57 .. 1 41 [] 23.2 0.01 X 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 8 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C 1/1 16 57 .. 1 41 [] 23.2 0.01 Z 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 9 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- U 1/1 16 57 .. 1 41 [] 23.2 0.01 // hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: 10 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- U 1/1 16 57 .. 1 41 [] 23.2 0.01 U 1/1 16 57 .. 1 41 [] 23.2 0.01 U 1/1 16 57 .. 1 41 [] 23.2 0.01 U 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 11 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- V 1/1 16 57 .. 1 41 [] 23.2 0.01 V 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 12 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- W 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 13 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- D 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 14 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 15 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 16 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- D 1/1 16 57 .. 1 41 [] 23.2 0.01 A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 17 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 A 1/1 16 57 .. 1 41 [] 23.2 0.01 A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 18 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 D 1/1 16 57 .. 1 41 [] 23.2 0.01 E 1/1 16 57 .. 1 41 [] 23.2 0.01 X 1/1 16 57 .. 1 41 [] 23.2 0.01 Y 1/1 16 57 .. 1 41 [] 23.2 0.01 Z 1/1 16 57 .. 1 41 [] 23.2 0.01 U 1/1 16 57 .. 1 41 [] 23.2 0.01 V 1/1 16 57 .. 1 41 [] 23.2 0.01 W 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 19 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- NN 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 20 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MM 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 21 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MM 1/1 16 57 .. 1 41 [] 23.2 0.01 OO 1/1 16 57 .. 1 41 [] 23.2 0.01 OO 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 22 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PP 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 23 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PP 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 24 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 25 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 26 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 27 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- QQ 1/1 16 57 .. 1 41 [] 23.2 0.01 Alignments of top-scoring domains: // Query sequence: 28 Accession: sdfjspdjfsjf Description: sdf;smdf;ms;fdm Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- singlet 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 29 Accession: sdfjspdjfsjf Description: sdf;smdf;ms;fdm Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- three 1/3 16 57 .. 1 41 [] 23.2 0.01 three 2/3 16 57 .. 1 41 [] 23.2 0.01 three 3/3 16 57 .. 1 41 [] 23.2 0.01 //