hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ENSP00000285681 Accession: acc_ENSP00000285681 Description: pep:known chromosome:NCBI36:21:16024215:16174248:1 gene:ENSG00000155313 transcript:ENST00000285681 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- UCH Ubiquitin carboxyl-terminal hydrolase 176.2 7.7e-50 1 UIM Ubiquitin interaction motif 38.8 1.7e-08 2 UBA UBA/TS-N domain 23.2 0.00084 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- UBA 1/1 16 57 .. 1 41 [] 23.2 0.00084 UIM 1/2 96 113 .. 1 18 [] 24.5 0.00035 UIM 2/2 123 140 .. 1 18 [] 14.3 7.7e-50 UCH 1/1 166 654 .. 1 318 [] 176.2 0.3 Alignments of top-scoring domains: UBA: domain 1 of 1, from 16 to 57: score 23.2, E = 0.00084 *->ideeavkqLreMTGf.dreeakkALeatngnverAvewLleh<-* ++ + qLre TG +d + ++AL+ +ngn+e Av +L + ENSP000002 16 HQQTFLNQLREITGInDTQILQQALKDSNGNLELAVAFLTAK 57 UIM: domain 1 of 2, from 96 to 113: score 24.5, E = 0.00035 *->mdEEedLqlALalSlqea<-* +d+ +dLq+A+alSl+e+ ENSP000002 96 GDDKDDLQRAIALSLAES 113 UIM: domain 2 of 2, from 123 to 140: score 14.3, E = 0.3 *->mdEEedLqlALalSlqea<-* +dEE+ + + L+ S++e+ ENSP000002 123 TDEEQAISRVLEASIAEN 140 UCH: domain 1 of 1, from 166 to 654: score 176.2, E = 7.7e-50 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyesein...es p+GL+N GNTC+ ++v+Q+Lf+ ++r+ +l++++ s ++ ++ ENSP000002 166 KAPVGLKNVGNTCWFSAVIQSLFNLLEFRRLVLNYKPPSNAQdlpRN 212 RF xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx nplgskgsllcaladLfnalqsg.yksvapsplkflqfkltlgkineefs ++++++ + ++l+ Lf+ l ++k+v ps+ ++ +l+ +++ + ENSP000002 213 QKEHRNLPFMRELRYLFALLVGTkRKYVDPSR-----AVEILKDAFKS-N 256 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx gymQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaa.eawkn ++QQD+ EF LLd+L+++++ ka++e ++ ENSP000002 257 DSQQQDVSEFTHKLLDWLEDAFQM-----------------KAEeETDE- 288 RF xxxxxxxxxxxxxxxxxxx hltrnesiitdlFqGqlks............................... ++ +++ ++lF G++ + ++++ ++++ ++ + + ++ ++ +++ ENSP000002 289 --EKPKNPMVELFYGRFLAvgvlegkkfentemfgqyplqvngfkdlhec 336 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx .......................klkikrLPpvLiihLKRFsyngetgln + +++ ++ ++++++++++ + ++ LPpvL++ L+RF++n +g++ ENSP000002 337 leaamiegeieslhsensgksgqEHWFTELPPVLTFELSRFEFNQALGRP 386 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx xxxxxxxxxx kKiddkVefPleLdlssycnaelkekevlrkd.ek.ieklkeerqr.... +Ki++k+efP L+l++y+ ++ + ++r++ ++ ++ l++ +qr ++ ENSP000002 387 EKIHNKLEFPQVLYLDRYMHRNREITRIKREEiKRlKDYLTVLQQRlery 436 RF .................................................. + ++++++ + + + + ++++ +++ ++ + +++++++ ++++ ENSP000002 437 lsygsgpkrfplvdvlqyalefasskpvctspvddidassppsgsipsqt 486 RF .................................................. ++++++++ +++ +++++++ ++++ +++ ++++ +++ + ++ ENSP000002 487 lpstteqqgalsselpstspssvaaissrsvihkpftqsrippdlpmhpa 536 RF xxxxx xx xx .......................................dedgn.ne.ee +++ ++++ + ++ ++ +++ ++++++ +++ ++ +++ +++ +++ + ENSP000002 537 prhiteeelsvlesclhrwrteiendtrdlqesisrihrTIELMySDkSM 586 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx peeeekdneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWy + Y+L+aV+vH G +++ GHY+ayi + +++W ENSP000002 587 -------------IQVPYRLHAVLVHEG-QANAGHYWAYIF-DHRESRWM 621 RF xxxxxxxxxxxxxxxxx xxxxxxxxxx kfDDekVsevteeevle......rsssAYiLFY<-* k++D V+ ++ ee +++ ++ r+ sAY L+Y ENSP000002 622 KYNDIAVTKSSWEELVRdsfggyRNASAYCLMY 654 // hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: 5 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A 1/1 16 57 .. 1 41 [] 23.2 0.01 B 1/1 16 57 .. 1 41 [] 23.2 0.01 C 1/1 16 57 .. 1 41 [] 23.2 0.01 // hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /home/yye/db/pfam20.0/Pfam_ls Sequence file: Human.fasta.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: 6 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C 1/1 16 57 .. 1 41 [] 23.2 0.01 Y 1/1 16 57 .. 1 41 [] 23.2 0.01 // Query sequence: 7 Accession: [none] Description: Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C 1/1 16 57 .. 1 41 [] 23.2 0.01 X 1/1 16 57 .. 1 41 [] 23.2 0.01 //