hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /home/yye/db/pfam20.0/Pfam_ls
Sequence file:            Human.fasta.1
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Query sequence: ENSP00000285681
Accession:      223
Description:    pep:known chromosome:NCBI36:21:16024215:16174248:1 gene:ENSG00000155313 transcript:ENST00000285681

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          176.2    7.7e-50   1
UIM      Ubiquitin interaction motif                     38.8    1.7e-08   2
UBA      UBA/TS-N domain                                 23.2    0.00084   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBA        1/1      16    57 ..     1    41 []    23.2  0.00084
UIM        1/2      96   113 ..     1    18 []    24.5  0.00035
UIM        2/2     123   140 ..     1    18 []    14.3  7.7e-50
UCH        1/1     166   654 ..     1   318 []   176.2  0.3
//

Query sequence: ENSP00000310334
Accession:      [none]
Description:    pep:known chromosome:NCBI36:21:16364713:16901413:1 gene:ENSG00000174496 transcript:ENST00000308787

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
	[no hits above thresholds]

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
	[no hits above thresholds]

//