P A U P * Version 4.0b10 for 32-bit Microsoft Windows Fri Mar 21 18:53:11 2008 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 4978 total characters: All characters are of type 'unord' All characters have equal weight 419 characters are constant 3179 variable characters are parsimony-uninformative Number of parsimony-informative characters = 1380 Character-state optimization: Accelerated transformation (ACCTRAN) Tree number 1 (rooted using default outgroup) Data matrix and reconstructed states for internal nodes: 111111111122222222223333333333444444444455555555556666666 Taxon/Node 123456789012345678901234567890123456789012345678901234567890123456 ------------------------------------------------------------------------------ MOUSE 000001111101100010110110001010111111110001111001001110101110001111 NEMVE 000001111000000000010100001000000000100001011110110001110101110111 MONBE 000001100001000100010001011111100000000001011000000000000000000100 DICDI 111101100000011001010100001000000000001110011000000000000000000000 ARATH 000011100010000001011000101010100000001000011000000000000000000000 6 000001100000000001010000001010100000001000011000000000000000000000 7 000001100000000000010000001010100000000001011000000000000000000100 8 000001111000000000010100001010100000100001011000000000100100000111 Data matrix and reconstructed states for internal nodes (continued): 444444444444444444444444444444444444444444444444444444444444444444 888888888888888999999999999999999999999999999999999999999999999999 888889999999999000000000011111111112222222222333333333344444444445 Taxon/Node 567890123456789012345678901234567890123456789012345678901234567890 ------------------------------------------------------------------------------ MOUSE 111110110111001001011110100001111101011101011011100111101011111100 NEMVE 111100100110000001011110101110011100100001111000010001101011011100 MONBE 011110100100000111011110000000011000000000010100000000101110001000 DICDI 000101101100010001100010010000011100010011010000000000101010000000 ARATH 010101101100100011111111001110011110000000010000001000110010000011 6 010101101100000011111110000000011100000000010000000000101010000000 7 011100100100000011011110000000011100000000010000000000101010001000 8 111100100110000001011110100000011100000001011000000001101011011100 Data matrix and reconstructed states for internal nodes (continued): 4444444444444444444444444444 9999999999999999999999999999 5555555556666666666777777777 Taxon/Node 1234567890123456789012345678 ---------------------------------------- MOUSE 1100111010111111101011011110 NEMVE 0100001000101101101000010010 MONBE 1100001100001111000000001010 DICDI 0110011000101100110001100001 ARATH 0111111001001100110110001010 6 0110011000001100110000001010 7 0100001000001101100000001010 8 0100001000101101101000011010 Tree length = 5111 Consistency index (CI) = 0.8920 Homoplasy index (HI) = 0.1080 CI excluding uninformative characters = 0.7143 HI excluding uninformative characters = 0.2857 Retention index (RI) = 0.6000 Rescaled consistency index (RC) = 0.5352 /------------------------------------------------------------ MOUSE | +--------------- NEMVE 8 | /---------------------------- MONBE | | \------------------------------7 /---------------------- DICDI \---------6 \------------------------------ ARATH /----------------------------------------------------------------------- MOUSE | +----------------------------------------------------------------------- NEMVE 8 | /----------------------------------------------- MONBE | | \-----------------------7 /------------------------ DICDI \----------------------6 \------------------------ ARATH Character change lists: Character CI Steps Changes ------------------------------------------------------------------------------ 1 (14-3-3=BRCT) 1.000 1 node_6 0 ==> 1 DICDI 2 (14-3-3=PARP) 1.000 1 node_6 0 ==> 1 DICDI 3 (14-3-3=VIT) 1.000 1 node_6 0 ==> 1 DICDI 4 (14-3-3=VWA) 1.000 1 node_6 0 ==> 1 DICDI 5 (2-Hacid_dh_C=ACT) 1.000 1 node_6 0 ==> 1 ARATH 8 (2OG-FeII_Oxy=Methyltransf_11) 1.000 1 node_8 1 ==> 0 node_7 9 (2OG-FeII_Oxy=P4Ha_N) 1.000 1 node_8 1 ==> 0 node_7 10 (2OG-FeII_Oxy=RRM_1) 1.000 1 node_8 0 ==> 1 MOUSE 11 (2OG-FeII_Oxy=ShK) 1.000 1 node_6 0 ==> 1 ARATH 12 (2OG-FeII_Oxy=TPR_2) 0.500 1 node_8 0 --> 1 MOUSE 1 node_7 0 --> 1 MONBE