#-------------------------------------------------------------------------------
# Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
# Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
#
# This file is part of Jalview.
#
# Jalview is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
#
# Jalview is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR
# PURPOSE. See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with Jalview. If not, see .
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Alignment Consensus Annotation
Alignment Consensus Annotation
The consensus displayed below the alignment is the percentage of the modal
residue per column. By default this calculation takes includes gaps in column.
You can choose to ignore gaps in the calculation by right clicking on the label
"Consensus" to the left of the consensus bar chart.
If the modal value is shared by more than 1 residue, a "+" symbol
is used in the display for the simple reason that it is not possible to display
multiple characters in a single character space.
Copying the consensus sequence
Select the "Copy Consensus Sequence" entry from
the consensus annotation label to copy the alignment's consensus sequence to the
clipboard.