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# Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
# Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
#
# This file is part of Jalview.
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# Jalview is free software: you can redistribute it and/or
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Clustal X Colour Scheme
This is an emulation of the default colourscheme used for alignments in Clustal X, a graphical interface for the ClustalW multiple sequence alignment program. Each residue in the alignment is assigned a colour if the amino acid profile of the alignment at that position meets some minimum criteria specific for the residue type.
The table below gives these criteria as clauses: {+X%,xx,y}, where X is the minimum percentage presence for any of the xx (or y) residue types.
Clustal X Default Colouring | |||||||||||||||||||||||||||||||||||||||
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