Reload and Save Alignment
Jalview remembers the original source of an alignment if it has
been loaded from a file or
URL.
- "File→Reload" will reload the
alignment from its original source, discarding any edits or applied
colouring and features since the last save.
- "File→Save" will save the
alignment back to the same filename, with the same format, easing the
the process of editing and updating an alignment file in
place.