Desktop Menus
- File
- Input Alignment from (See more on file formats)
- File (Control O)
open file(s) on your local file system
- URL
open a file from a website. The URL MUST start with http://
- Textbox
copy and paste an alignment into a text window
- Fetch Sequence
Shows a dialog window in which you can select known ids from
Uniprot, EMBL, EMBLCDS or PDB database using Web Services provided by
the European Bioinformatics Institute.
- Save Project
Saves all currently open alignment windows with their current
view settings and any associated trees, as a Jalview Archive (which has a
.jar extension).
- Load Project
Loads Jalview archives only.
- Quit
Close Jalview.
Note - any annotation you have made on alignments will be lost
unless you Save your work before quitting.
- Tools
- Preferences
Change the default visual settings for opening new alignment
windows.
- Help
- About
Displays the version and creation date of the application, as
well as acknowledgements and a citation reference.
- Documentation
Displays help files as a browseable, searchable set of pages
with a table of contents.
- Window
Each time a new window is added to the Jalview Desktop a
corresponding menu item will be added to the "Window" menu
that will bring the window to the top of the pile when it is selected.
- Close All
Close all alignment and analysis windows.
Note: This will erase all alignments from memory, and cannot be undone!
- Raise Associated Windows
Bring all windows associated with the current alignment to the top of the pile.
- Minimise Associated Windows
Hide all windows related to the current alignment behind icons on the Jalview Desktop.