Popup Menu
This menu is visible when right clicking either within a selected region
on the alignment or on a selected sequence name.
- Define
- Group
This will display a window asking for the name of the currently
selected group. Click OK to set the name, cancel to use the default group
name.
- Remove Group
This will undefine the selected group.
- Group Colour
Sets the colour
of the group.
- Boxes
If selected the background of a residue within the selected
group will be coloured according to the assigned colour scheme.
- Text
If selected the selected group will display text.
- Colour Text
If selected the selected group will display text in a colour
slightly darker than the background colour of that residue.
- Border Colour
Selecting this will display a "Colour Chooser"
window. Select a colour than press OK to set the border colour of a group.
- Sequence
This menu is only visible if you right-click on a sequence name.
- Edit Name
You may edit the name of each sequence. A window will be
displayed asking for a new sequence name to be entered. Press OK to accept
your edit.
- View PDB Structure
In the current version you will first need to select "View
-> Sequence Features" before associating a PDB file with a sequence.
If the sequence has a PDB file associated with it Jalview will display
a 3D interactive viewer of the file.
- Link
This menu item lists all links which have been set up in the Preferences
Connections tab. It is only displayed when you right click (Apple click) on
a sequence id.