Popup Menu
This menu is visible when right clicking either within a selected region
on the alignment or on a selected sequence name.
- Define
- Group
This will display a window asking for the name of the currently
selected group. Click OK to set the name, cancel to use the default group
name.
- Remove Group
This will undefine the selected group.
- Group Colour
Sets the colour
of the group.
- Boxes
If selected the background of a residue within the selected
group will be coloured according to the assigned colour scheme.
- Text
If selected the selected group will display text.
- Colour Text
If selected the selected group will display text in a colour
slightly darker than the background colour of that residue.
- Border Colour
Selecting this will display a "Colour Chooser"
window. Select a colour than press OK to set the border colour of a group.
- Sequence
This menu is only visible if you right-click on a sequence name.
- Edit Name
You may edit the name of each sequence. A window will be
displayed asking for a new sequence name to be entered. Press OK to accept
your edit.
- View PDB Structure
If the sequence has a PDB file associated with it Jalview will display
a 3D interactive viewer of the file.
This entry is only present if the sequence has an
associated PDB structure.
If you can't see this entry for your sequence, and the sequence name
is a uniprot identifier, then try enabling the "View
-> Sequence Features" and opening the popup menu again.
- Link
This menu item lists all links which have been set up in the Preferences
Connections tab. It is only displayed when you right click (Apple click) on
a sequence id.