Release |
New Features |
Issues Resolved |
2.1
21/8/06 |
- MAFFT Multiple Alignment in default Web Service list
- DAS Feature fetching
- Hide sequences and columns
- Export Annotations and Features
- GFF file reading / writing
- Associate structures with sequences from local PDB files
- Add sequences to exisiting alignment
- Recently opened files / URL lists
- Applet can launch the full application
- Applet has transparency for features (Java 1.2 required)
- Applet has user defined colours parameter
|
- Redundancy Panel reinstalled in the Applet
- Monospaced font - EPS / rescaling bug fixed
- Annotation files with sequence references bug fixed
|
2.08.1
2/5/06 |
- Change case of selected region from Popup menu
- Choose to match case when searching
- Middle mouse button and mouse movement can compress / expand the visible
width and height of the alignment
|
- Annotation Panel displays complete JNet results
|
2.08b
18/4/06 |
|
- Java 1.5 bug - InternalMessageDialog fix for threads
- Righthand label on wrapped alignments shows correct value
|
2.08
10/4/06 |
- Editing can be locked to the selection area
- Keyboard editing
- Create sequence features from searches
- Precalculated annotations can be loaded onto alignments
- Features file allows grouping of features
- Annotation Colouring scheme added
- Smooth fonts off by default - Faster rendering
- Choose to toggle Autocalculate Consensus On/Off
|
- Drag & Drop fixed on Linux
- Jalview Archive file faster to load/save, sequence descriptions saved.
|
2.07
12/12/05 |
- PDB Structure Viewer enhanced
- Sequence Feature retrieval and display enhanced
- Choose to output sequence start-end after sequence name for file output
- Sequence Fetcher WSDBFetch@EBI
- Applet can read feature files, PDB files and can be used for HTML
form input
|
- HTML output writes groups and features
- Group editing is Control and mouse click
- File IO bugs
|
2.06
28/9/05 |
- View annotations in wrapped mode
- More options for PCA viewer
|
- GUI bugs resolved
- Runs with -nodisplay from command line
|
| 2.05b
15/9/05 |
- Choose EPS export as lineart or text
- Jar files are executable
- Can read in Uracil - maps to unknown residue
|
- Known OutOfMemory errors give warning message
- Overview window calculated more efficiently
- Several GUI bugs resolved
|
2.05
30/8/05 |
- Edit and annotate in "Wrapped" view
|
- Several GUI bugs resolved
|
2.04
24/8/05 |
- Hold down mouse wheel & scroll to change font size
|
- Improved JPred client reliability
- Improved loading of Jalview files
|
| 2.03
18/8/05 |
- Set Proxy server name and port in preferences
- Multiple URL links from sequence ids
- User Defined Colours can have a scheme name and added to Colour Menu
- Choose to ignore gaps in consensus calculation
- Unix users can set default web browser
- Runs without GUI for batch processing
- Dynamically generated Web Service Menus
|
- InstallAnywhere download for Sparc Solaris
|
| 2.02
18/7/05 |
|
- Copy & Paste order of sequences maintains alignment order.
|
2.01
12/7/05 |
- Use delete key for deleting selection.
- Use Mouse wheel to scroll sequences.
- Help file updated to describe how to add alignment annotations.
- Version and build date written to build properties file.
- InstallAnywhere installation will check for updates at launch of Jalview.
|
- Delete gaps bug fixed.
- FileChooser sorts columns.
- Can remove groups one by one.
- Filechooser icons installed.
- Finder ignores return character when searching. Return key will initiate
a search.
|
| 2.0
20/6/05 |
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