MAFFT Alignments

MAFFT is a program for the alignment of many protein sequences.

Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids Research, 33 511-518

This alignment method is applied to the selected region, if any, or the whole sequence set when the Web Service→Alignment→MAFFT Multiple Sequence Alignment menu item is selected.