#------------------------------------------------------------------------------- # Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1) # Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle # # This file is part of Jalview. # # Jalview is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License # as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. # # Jalview is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty # of MERCHANTABILITY or FITNESS FOR A PARTICULAR # PURPOSE. See the GNU General Public License for more details. # # You should have received a copy of the GNU General Public License along with Jalview. If not, see . #------------------------------------------------------------------------------- Muscle Alignment

Muscle Alignments

Muscle is a program for the alignment of many protein sequences.

Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high accuracy and high throughput
Nucleic Acids Research 32(5), 1792-97.

This alignment method is applied to the selected region, if any, or the whole sequence set when the Web Service→Alignment→Muscle Protein Sequence Alignment menu item is selected.