What's new ?
The Jalview 2.7 release features new web services, and important
improvements to the way in which Jalview handles alignments and
associated PDB structures, as well as numerous minor improvements and
bug fixes. Version 2.7 of the JalviewLite applet also features a
significantly enhanced Javascript API enabling it to be more easily
integrated with javascript based web applications.
For full
details see the Jalview 2.7
release history.
Highlights in Jalview Desktop Version 2.7
Issues Resolved (a select list - see the release history for full details)
Issues in the Jalview Desktop
- Problems viewing associated structures for sequences
retrieved from UNIPROT
- Problems viewing Jalview projects from older versions in
version 2.6
- Preservation of hidden annotation rows and tree bootstrap
values in projects
- Newly added JABAWS servers not always visible in web services
menu
Issues specific to the JalviewLite Applet
- Layout problems when lots of annotation rows are displayed
- <= shown as = in annotation row tooltip
- export features raises exception when no features exist
- relative URLs not handled properly when used in parameters
and annotation files
Issues affecting both applet and application
- sequence numbering not preserved in MSF alignment output
- sequence associated secondary structure not correctly parsed
in interleaved stockholm
- sequences containing lowercase letters are not properly
associated with their pdb files
- Jalview PDB file reader does not extract sequence from deoxy
nucleotide chains correctly
- Sequence length given in alignment properties window is off
by 1