What's new ?

If you are reading this then you will already have seen some of the recent changes made to Jalview.
Jalview takes advantage of some of the more recent user interface developments in the Java programming language. For instance Jalview is now a multi windowed application, this keeps all your Jalview windows neatly together in one main application window.

If you were familiar with the original Jalview, here is a list of important features you should know about the current development:

Release
New Features
Issues Resolved
2.06
28/9/05
  • View annotations in wrapped mode
  • More options for PCA viewer
  • GUI bugs resolved
  • Runs with -nodisplay from command line
2.05b
15/9/05
  • Choose EPS export as lineart or text
  • Jar files are executable
  • Can read in Uracil - maps to unknown residue
  • Known OutOfMemory errors give warning message
  • Overview window calculated more efficiently
  • Several GUI bugs resolved
2.05
30/8/05
  • Edit and annotate in "Wrapped" view
  • Several GUI bugs resolved
2.04
24/8/05
  • Hold down mouse wheel & scroll to change font size
  • Improved JPred client reliability
  • Improved loading of Jalview files
2.03
18/8/05
  • Set Proxy server name and port in preferences
  • Multiple URL links from sequence ids
  • User Defined Colours can have a scheme name and added to Colour Menu
  • Choose to ignore gaps in consensus calculation
  • Unix users can set default web browser
  • Runs without GUI for batch processing
  • Dynamically generated Web Service Menus
  • InstallAnywhere download for Sparc Solaris
2.02
18/7/05
 
  • Copy & Paste order of sequences maintains alignment order.
2.01
12/7/05
  • Use delete key for deleting selection.
  • Use Mouse wheel to scroll sequences.
  • Help file updated to describe how to add alignment annotations.
  • Version and build date written to build properties file.
  • InstallAnywhere installation will check for updates at launch of Jalview.
  • Delete gaps bug fixed.
  • FileChooser sorts columns.
  • Can remove groups one by one.
  • Filechooser icons installed.
  • Finder ignores return character when searching. Return key will initiate a search.
2.0
20/6/05
  • New codebase