---
version: 2.11.4.0
date: 2024-06-30
channel: "develop"
---

## New Features

- <!-- JAL-4392 --> Consensus secondary structure visualization for alignments
- <!-- JAL-4386 --> Calculate tree or PCA using secondary structure annotation
- <!-- JAL-4159 --> Calculate PASiMap projection for sequences - ported by Thomas Morell ( U. Konstanz)
- <!-- JAL-789,JAL-4257 --> allow adjustment of gap opening, extension, and score model for built in pairwise alignment


### development and deployment


## Issues Resolved


### New Known Issues