ScoreMatrix BLOSUM62
#
# The BLOSUM62 substitution matrix, as at https://www.ncbi.nlm.nih.gov/Class/FieldGuide/BLOSUM62.txt
# The first line declares a ScoreMatrix with the name BLOSUM62 (shown in menus)
#
# Scores are not symbol case sensitive, unless column(s) are provided for lower case characters
# The 'guide symbol' at the start of each row of score values is optional
# Values may be integer or floating point, delimited by tab, space, comma or combinations
#
	 A	 R	 N	 D	 C	 Q	 E	 G	 H	 I	 L	 K	 M	 F	 P	 S	 T	 W	 Y	 V	 B	 Z	 X	 * 
A	 4	-1	-2	-2	 0	-1	-1	 0	-2	-1	-1	-1	-1	-2	-1	 1	 0	-3	-2	 0	-2	-1	 0	-4
R	-1	 5	 0	-2	-3	 1	 0	-2	 0	-3	-2	 2	-1	-3	-2	-1	-1	-3	-2	-3	-1	 0	-1	-4
N	-2	 0	 6	 1	-3	 0	 0	 0	 1	-3	-3	 0	-2	-3	-2	 1	 0	-4	-2	-3	 3	 0	-1	-4
D	-2	-2	 1	 6	-3	 0	 2	-1	-1	-3	-4	-1	-3	-3	-1	 0	-1	-4	-3	-3	 4	 1	-1	-4
C	 0	-3	-3	-3	 9	-3	-4	-3	-3	-1	-1	-3	-1	-2	-3	-1	-1	-2	-2	-1	-3	-3	-2	-4
Q	-1	 1	 0	 0	-3	 5	 2	-2	 0	-3	-2	 1	 0	-3	-1	 0	-1	-2	-1	-2	 0	 3	-1	-4
E	-1	 0	 0	 2	-4	 2	 5	-2	 0	-3	-3	 1	-2	-3	-1	 0	-1	-3	-2	-2	 1	 4	-1	-4
G	 0	-2	 0	-1	-3	-2	-2	 6	-2	-4	-4	-2	-3	-3	-2	 0	-2	-2	-3	-3	-1	-2	-1	-4
H	-2	 0	 1	-1	-3	 0	 0	-2	 8	-3	-3	-1	-2	-1	-2	-1	-2	-2	 2	-3	 0	 0	-1	-4
I	-1	-3	-3	-3	-1	-3	-3	-4	-3	 4	 2	-3	 1	 0	-3	-2	-1	-3	-1	 3	-3	-3	-1	-4
L	-1	-2	-3	-4	-1	-2	-3	-4	-3	 2	 4	-2	 2	 0	-3	-2	-1	-2	-1	 1	-4	-3	-1	-4
K	-1	 2	 0	-1	-3	 1	 1	-2	-1	-3	-2	 5	-1	-3	-1	 0	-1	-3	-2	-2	 0	 1	-1	-4
M	-1	-1	-2	-3	-1	 0	-2	-3	-2	 1	 2	-1	 5	 0	-2	-1	-1	-1	-1	 1	-3	-1	-1	-4
F	-2	-3	-3	-3	-2	-3	-3	-3	-1	 0	 0	-3	 0	 6	-4	-2	-2	 1	 3	-1	-3	-3	-1	-4
P	-1	-2	-2	-1	-3	-1	-1	-2	-2	-3	-3	-1	-2	-4	 7	-1	-1	-4	-3	-2	-2	-1	-2	-4
S	 1	-1	 1	 0	-1	 0	 0	 0	-1	-2	-2	 0	-1	-2	-1	 4	 1	-3	-2	-2	 0	 0	 0	-4
T	 0	-1	 0	-1	-1	-1	-1	-2	-2	-1	-1	-1	-1	-2	-1	 1	 5	-2	-2	 0	-1	-1	 0	-4
W	-3	-3	-4	-4	-2	-2	-3	-2	-2	-3	-2	-3	-1	 1	-4	-3	-2	11	 2	-3	-4	-3	-2	-4
Y	-2	-2	-2	-3	-2	-1	-2	-3	 2	-1	-1	-2	-1	 3	-3	-2	-2	 2	 7	-1	-3	-2	-1	-4
V	 0	-3	-3	-3	-1	-2	-2	-3	-3	 3	 1	-2	 1	-1	-2	-2	 0	-3	-1	 4	-3	-2	-1	-4
B	-2	-1	 3	 4	-3	 0	 1	-1	 0	-3	-4	 0	-3	-3	-2	 0	-1	-4	-3	-3	 4	 1	-1	-4
Z	-1	 0	 0	 1	-3	 3	 4	-2	 0	-3	-3	 1	-1	-3	-1	 0	-1	-3	-2	-2	 1	 4	-1	-4
X	 0	-1	-1	-1	-2	-1	-1	-1	-1	-1	-1	-1	-1	-1	-2	 0	 0	-2	-1	-1	-1	-1	-1	-4
*	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	 1