## potentially a better set of parameters (esp. -b & -v)
## which avoid PSI-BLAST dying with large number of hits
 
# 'soft' filtering of the query sequence
psiblast.prms.set1=-e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -F "m S" 

# stricter searching criteria
psiblast.prms.set2=-e0.001 -h0.0001 -m6 -b10000 -v10000 -j3
psiblast.prms.set3=-e0.05 -h0.01 -m6 -b10000 -v10000 -j3