additional
identifier
which
properly
disambiguates
the
structure
view
from
any
other
view
with
the
same
attributes.
This
is
not
an
ID,
because
it
is
possible
to
have
many
references
to
the
same
physical
structure
view
from
different
sequences
in
an
alignment.
A
structureState
element
citing
the
same
viewId
will
appear
for
each
instance.
Flag
set
if
the
alignment
panel
containing
this
JSeq
should
be
included
in
those
used
to
perform
a
structure
superposition
(since
Jalview
2.7).
Flag
set
if
the
alignment
panel
containing
this
JSeq
should
be
included
in
those
used
to
colour
its
associated
sequences
in
this
structureState(since
Jalview
2.7).
Flag
set
if
the
structure
display
is
coloured
by
the
Jmol
state,
rather
than
by
one
or
more
linked
alignment
views.
Optional sequence group ID (only
needs to be unique for this
alignment)
handle for the calculation which uses this parameter set
should the calculation be performed immediately after loading in order to refresh results
should the calculation be automatically performed on edits
unique id used by jalview to
synchronize between stored and
instantiated views
Tree ID added for binding tree
visualization settings to vamsas
document trees in jalview 2.4.1
Optional minimum colour
for graduated feature
colour
threshold value for
graduated feature colour
threshold type for
graduated feature colour
base attributes for windows displayed in Jalview desktop.