additional identifier which properly disambiguates the structure view from any other view with the same attributes. This is not an ID, because it is possible to have many references to the same physical structure view from different sequences in an alignment. A structureState element citing the same viewId will appear for each instance. Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7). Flag set if the alignment panel containing this JSeq should be included in those used to colour its associated sequences in this structureState(since Jalview 2.7). Flag set if the structure display is coloured by the Jmol state, rather than by one or more linked alignment views. An identifier for the viewer type, currently either JMOL or CHIMERA Reference to a viewer showing RNA structure for this sequence. Schema supports one viewer showing multiple annotations for multiple sequences, though currently only one annotation for one sequence (gapped or trimmed) is used id attribute of Annotation in vamsasModel for the secondary structure annotation shown in the viewer if true the RNA structure is shown with gaps, if false without name of the project jar entry that holds the VARNA viewer state for the structure An id unique to the RNA viewer panel horizontal position of split pane divider Index of the selected structure in the viewer panel name of the project jar entry that holds the HMM file with the profile for the sequence Optional sequence group ID (only needs to be unique for this alignment) handle for the calculation which uses this parameter set should the calculation be performed immediately after loading in order to refresh results should the calculation be automatically performed on edits unique id used by jalview to synchronize between stored and instantiated views The viewport id of this viewport's (cdna/protein) coding complement, if any Tree ID added for binding tree visualization settings to vamsas document trees in jalview 2.4.1 name of feature attribute to colour by, or attribute and sub-attribute optional filter(s) applied to the feature type Optional minimum colour for graduated feature colour threshold value for graduated feature colour threshold type for graduated feature colour key2 may be used for a sub-attribute of key base attributes for windows displayed in Jalview desktop.