/*
* Jalview - A Sequence Alignment Editor and Viewer
* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
*/

package MCview;

import java.util.*;
import java.awt.*;

public class myAtom {
  float x;
  float y;
  float z;

  public int     number;
  public String  name;
  public String  resName;
  public int     resNumber;
  public int     type;
  public Color   color;
  public String  chain;
  public boolean isSelected = false;

  public myAtom(StringTokenizer str) {

    this.number  = (new Integer(str.nextToken())).intValue();
    this.name    = str.nextToken();
    this.resName = str.nextToken();

    String tmpstr = new String();

    try {
      tmpstr         = str.nextToken();
      this.resNumber = (new Integer(tmpstr).intValue());
      this.chain     = "A";
      this.color     = Color.lightGray;

    } catch(NumberFormatException e) {
      this.chain = tmpstr;

      if (tmpstr.equals("A")) {
        this.color = Color.lightGray;

      } else {
        this.color = Color.red;
      }

      this.resNumber = (new Integer(str.nextToken()).intValue());
    }

    this.x = (float)(new Float(str.nextToken()).floatValue());
    this.y = (float)(new Float(str.nextToken()).floatValue());
    this.z = (float)(new Float(str.nextToken()).floatValue());
  }

  public void setColor(Color col) {
    this.color = col;
  }
}