/*
 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 */
package jalview.api;

import jalview.datamodel.AlignmentI;
import jalview.structure.StructureSelectionManager;

/**
 * abstract interface implemented by alignment panels holding an alignment view
 * 
 * @author JimP
 * 
 */
public interface AlignmentViewPanel extends OOMHandlerI
{

  AlignmentI getAlignment();

  StructureSelectionManager getStructureSelectionManager();

  /**
   * repaint the alignment view after a datamodel update.
   * 
   * @param updateOverview
   *          - if true, the overview panel will also be updated and repainted
   */

  void paintAlignment(boolean updateOverview);

  /**
   * automatically adjust annotation panel height for new annotation whilst
   * ensuring the alignment is still visible.
   */
  void adjustAnnotationHeight();
}