/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
import jalview.api.AlignmentViewPanel;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
//import jalview.ext.jmol.JalviewJmolBinding;
import jalview.structure.StructureSelectionManager;
import java.awt.Container;
import java.util.Map;
import javajs.awt.Dimension;
//import org.jmol.api.JmolAppConsoleInterface;
//import org.jmol.console.AppletConsole;
//import org.jmol.java.BS;
class AppletJmolBinding //extends JalviewJmolBinding
{
// /**
// * Window that contains the bound Jmol instance
// */
// private AppletJmol appletJmolBinding;
//
// public AppletJmolBinding(AppletJmol appletJmol,
// StructureSelectionManager sSm, PDBEntry[] pdbentry,
// SequenceI[][] seq, String[][] chains, String protocol)
// {
// super(sSm, pdbentry, seq, chains, protocol);
// appletJmolBinding = appletJmol;
// }
//
// @Override
// public jalview.api.FeatureRenderer getFeatureRenderer(
// AlignmentViewPanel alignment)
// {
// AlignmentPanel ap = (AlignmentPanel) alignment;
// if (appletJmolBinding.ap.av.isShowSequenceFeatures())
// {
// if (appletJmolBinding.fr == null)
// {
// appletJmolBinding.fr = new jalview.appletgui.FeatureRenderer(
// appletJmolBinding.ap.av);
// }
//
// appletJmolBinding.fr
// .transferSettings(appletJmolBinding.ap.seqPanel.seqCanvas
// .getFeatureRenderer());
// }
//
// return appletJmolBinding.fr;
// }
//
// @Override
// public jalview.api.SequenceRenderer getSequenceRenderer(
// AlignmentViewPanel alignment)
// {
// return new SequenceRenderer(((AlignmentPanel) alignment).av);
// }
//
// @Override
// public void sendConsoleEcho(String strEcho)
// {
// if (appletJmolBinding.scriptWindow == null)
// {
// appletJmolBinding.showConsole(true);
// }
//
// appletJmolBinding.history.append("\n" + strEcho);
// }
//
// @Override
// public void sendConsoleMessage(String strStatus)
// {
// if (appletJmolBinding.history != null && strStatus != null
// && !strStatus.equals("Script completed"))
// {
// appletJmolBinding.history.append("\n" + strStatus);
// }
// }
//
// @Override
// public void showUrl(String url, String target)
// {
// appletJmolBinding.ap.alignFrame.showURL(url, target);
//
// }
//
// @Override
// public void refreshGUI()
// {
// appletJmolBinding.updateTitleAndMenus();
// }
//
// public void updateColours(Object source)
// {
// AlignmentPanel ap = (AlignmentPanel) source;
// colourBySequence(ap);
// }
//
// public void showUrl(String url)
// {
// try
// {
// appletJmolBinding.ap.av.applet.getAppletContext().showDocument(
// new java.net.URL(url), "jmol");
// } catch (java.net.MalformedURLException ex)
// {
// }
// }
//
// public void newJmolPopup(boolean translateLocale, String menuName,
// boolean asPopup)
// {
// // jmolpopup = new JmolAwtPopup(); // is this used?
// // jmolpopup.jpiInitialize((viewer), menuName);
// }
//
// @Override
// public void notifyScriptTermination(String strStatus, int msWalltime)
// {
// // do nothing.
// }
//
// public void selectionChanged(BS arg0)
// {
// // TODO Auto-generated method stub
//
// }
//
// @Override
// public void refreshPdbEntries()
// {
// // noop
// }
//
// @Override
// public void showConsole(boolean show)
// {
// appletJmolBinding.showConsole(show);
// }
//
// @Override
// protected JmolAppConsoleInterface createJmolConsole(
// Container consolePanel, String buttonsToShow)
// {
// JmolAppConsoleInterface appc = new AppletConsole();
// appc.start(viewer);
// return appc;
// }
//
// @Override
// protected void releaseUIResources()
// {
// appletJmolBinding = null;
// closeConsole();
// }
//
// @Override
// public void releaseReferences(Object svl)
// {
// }
//
// @Override
// public Dimension resizeInnerPanel(String data)
// {
// // TODO Auto-generated method stub
// return null;
// }
//
// @Override
// public Map getJSpecViewProperty(String arg0)
// {
// // TODO Auto-generated method stub
// return null;
// }
}