/* * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1) * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.appletgui; import java.util.*; import java.awt.*; import java.awt.event.*; import jalview.datamodel.*; import jalview.schemes.*; import java.awt.Rectangle; public class FeatureColourChooser extends Panel implements ActionListener, AdjustmentListener, ItemListener, MouseListener { Frame frame; FeatureRenderer fr; FeatureSettings fs; AlignmentPanel ap; GraduatedColor cs; Object oldcs; Hashtable oldgroupColours; boolean adjusting = false; private float min,max; String type=null; public FeatureColourChooser(FeatureSettings fsettings, String type) { this.fs = fsettings; this.type = type; fr = fsettings.fr; ap = fsettings.ap; float mm[] = ((float[][]) fr.minmax.get(type))[0]; min = mm[0]; max = mm[1]; oldcs = fr.featureColours.get(type); if (oldcs instanceof GraduatedColor) { cs = new GraduatedColor((GraduatedColor) oldcs, min, max); } else { // promote original color to a graduated color Color bl = Color.black; if (oldcs instanceof Color) { bl = (Color) oldcs; } // original colour becomes the maximum colour cs = new GraduatedColor(Color.white,bl,mm[0],mm[1]); } minColour.setBackground(cs.getMinColor()); maxColour.setBackground(cs.getMaxColor()); adjusting = true; try { jbInit(); } catch (Exception ex) { } // To HERE! adjusting = false; changeColour(); slider.addAdjustmentListener(this); slider.addMouseListener(this); frame = new Frame(); frame.add(this); jalview.bin.JalviewLite.addFrame(frame, "Graduated Feature Colour for "+type, 480, 145); validate(); } public FeatureColourChooser() { try { jbInit(); } catch (Exception ex) { ex.printStackTrace(); } } private void jbInit() throws Exception { minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); minColour.setLabel("Min Colour"); minColour.addActionListener(this); maxColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); maxColour.setLabel("Max Colour"); maxColour.addActionListener(this); thresholdIsMin.addItemListener(this); ok.setLabel("OK"); ok.addActionListener(this); cancel.setLabel("Cancel"); cancel.addActionListener(this); this.setLayout(borderLayout1); jPanel2.setLayout(flowLayout1); jPanel1.setBackground(Color.white); jPanel2.setBackground(Color.white); threshold.addItemListener(this); threshold.addItem("No Threshold"); threshold.addItem("Above Threshold"); threshold.addItem("Below Threshold"); jPanel3.setLayout(null); thresholdValue.addActionListener(this); slider.setBackground(Color.white); slider.setEnabled(false); slider.setBounds(new Rectangle(153, 3, 93, 21)); thresholdValue.setEnabled(false); thresholdValue.setBounds(new Rectangle(248, 2, 79, 22)); thresholdValue.setColumns(5); jPanel3.setBackground(Color.white); //currentColours.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); //currentColours.setLabel("Use Original Colours"); //currentColours.addItemListener(this); threshold.setBounds(new Rectangle(11, 3, 139, 22)); thresholdIsMin.setBackground(Color.white); thresholdIsMin.setLabel("Threshold is min/max"); thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23)); jPanel1.add(ok); jPanel1.add(cancel); //jPanel2.add(currentColours); jPanel2.add(minColour); jPanel2.add(maxColour); jPanel3.add(threshold); jPanel3.add(slider); jPanel3.add(thresholdValue); jPanel3.add(thresholdIsMin); this.add(jPanel2, java.awt.BorderLayout.NORTH); this.add(jPanel3, java.awt.BorderLayout.CENTER); this.add(jPanel1, java.awt.BorderLayout.SOUTH); } Button minColour = new Button(); Button maxColour = new Button(); Button ok = new Button(); Button cancel = new Button(); Panel jPanel1 = new Panel(); Panel jPanel2 = new Panel(); Choice threshold = new Choice(); FlowLayout flowLayout1 = new FlowLayout(); Panel jPanel3 = new Panel(); Scrollbar slider = new Scrollbar(Scrollbar.HORIZONTAL); TextField thresholdValue = new TextField(20); BorderLayout borderLayout1 = new BorderLayout(); Checkbox thresholdIsMin = new Checkbox(); private GraphLine threshline; public void actionPerformed(ActionEvent evt) { if (evt.getSource() == thresholdValue) { try { float f = new Float(thresholdValue.getText()).floatValue(); slider.setValue((int) (f * 1000)); adjustmentValueChanged(null); } catch (NumberFormatException ex) { } } else if (evt.getSource() == minColour) { minColour_actionPerformed(null); } else if (evt.getSource() == maxColour) { maxColour_actionPerformed(null); } else if (evt.getSource() == ok) { changeColour(); frame.setVisible(false); } else if (evt.getSource() == cancel) { reset(); ap.paintAlignment(true); frame.setVisible(false); } else { changeColour(); } } public void itemStateChanged(ItemEvent evt) { changeColour(); } public void adjustmentValueChanged(AdjustmentEvent evt) { if (!adjusting) { thresholdValue.setText(((float) slider.getValue() / 1000f) + ""); valueChanged(); } } protected void valueChanged() { changeColour(); threshline.value = (float) slider.getValue() / 1000f; ap.paintAlignment(false); } public void minColour_actionPerformed(Color newCol) { if (newCol != null) { minColour.setBackground(newCol); minColour.repaint(); changeColour(); } else { new UserDefinedColours(this, "Select Colour for Minimum Value", minColour.getBackground()); } } public void maxColour_actionPerformed(Color newCol) { if (newCol != null) { maxColour.setBackground(newCol); maxColour.repaint(); changeColour(); } else { new UserDefinedColours(this, "Select Colour for Maximum Value", maxColour.getBackground()); } } void changeColour() { // Check if combobox is still adjusting if (adjusting) { return; } int aboveThreshold = AnnotationColourGradient.NO_THRESHOLD; if (threshold.getSelectedItem().equals("Above Threshold")) { aboveThreshold = AnnotationColourGradient.ABOVE_THRESHOLD; } else if (threshold.getSelectedItem().equals("Below Threshold")) { aboveThreshold = AnnotationColourGradient.BELOW_THRESHOLD; } slider.setEnabled(true); thresholdValue.setEnabled(true); GraduatedColor acg = new GraduatedColor(minColour.getBackground(), maxColour.getBackground(), min, max); if (aboveThreshold == AnnotationColourGradient.NO_THRESHOLD) { slider.setEnabled(false); thresholdValue.setEnabled(false); thresholdValue.setText(""); } else if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD && threshline == null) { // todo visual indication of feature threshold threshline = new jalview.datamodel.GraphLine( (max - min) / 2f, "Threshold", Color.black); } if (aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) { adjusting = true; acg.setThresh(threshline.value); float range = max * 1000f - min * 1000f; slider.setMinimum((int) (min * 1000)); slider.setMaximum((int) (max * 1000)); slider.setValue((int) (threshline.value * 1000)); thresholdValue.setText(threshline.value + ""); slider.setEnabled(true); thresholdValue.setEnabled(true); adjusting = false; } acg.setThreshType(aboveThreshold); if (thresholdIsMin.getState() && aboveThreshold != AnnotationColourGradient.NO_THRESHOLD) { if (aboveThreshold==AnnotationColourGradient.ABOVE_THRESHOLD) { acg = new GraduatedColor(acg, threshline.value, max); } else { acg = new GraduatedColor(acg, min,threshline.value); } } fr.featureColours.put(type,acg); cs = acg; ap.paintAlignment(false); } void reset() { fr.featureColours.put(type, oldcs); ap.paintAlignment(true); } public void mouseClicked(MouseEvent evt) { } public void mousePressed(MouseEvent evt) { } public void mouseReleased(MouseEvent evt) { ap.paintAlignment(true); } public void mouseEntered(MouseEvent evt) { } public void mouseExited(MouseEvent evt) { } }