/* * Jalview - A Sequence Alignment Editor and Viewer * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.appletgui; import java.awt.*; import jalview.datamodel.*; public class IdCanvas extends Panel { protected AlignViewport av; protected boolean showScores = true; protected int maxIdLength = -1; protected String maxIdStr = null; Image image; Graphics gg; int imgHeight = 0; boolean fastPaint = false; java.util.Vector searchResults; public IdCanvas(AlignViewport av) { setLayout(null); this.av = av; PaintRefresher.Register(this, av.alignment); } public void drawIdString(Graphics gg, SequenceI s, int i, int starty, int ypos) { int charHeight = av.getCharHeight(); if (searchResults != null && searchResults.contains(s)) { gg.setColor(Color.black); gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width, charHeight); gg.setColor(Color.white); } else if (av.getSelectionGroup() != null && av.getSelectionGroup().sequences.contains(s)) { gg.setColor(Color.lightGray); gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width, charHeight); gg.setColor(Color.white); } else { gg.setColor(s.getColor()); gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width, charHeight); gg.setColor(Color.black); } gg.drawString( s.getDisplayId(av.getShowJVSuffix()), 0, ((i - starty) * charHeight) + ypos + charHeight - (charHeight / 5)); } public void fastPaint(int vertical) { if (gg == null) { repaint(); return; } gg.copyArea(0, 0, getSize().width, imgHeight, 0, -vertical * av.charHeight); int ss = av.startSeq, es = av.endSeq, transY = 0; if (vertical > 0) // scroll down { ss = es - vertical; if (ss < av.startSeq) // ie scrolling too fast, more than a page at a time { ss = av.startSeq; } else { transY = imgHeight - vertical * av.charHeight; } } else if (vertical < 0) { es = ss - vertical; if (es > av.endSeq) { es = av.endSeq; } } gg.translate(0, transY); drawIds(ss, es); gg.translate(0, -transY); fastPaint = true; repaint(); } public void update(Graphics g) { paint(g); } public void paint(Graphics g) { if (getSize().height < 0 || getSize().width < 0) { return; } if (fastPaint) { fastPaint = false; g.drawImage(image, 0, 0, this); return; } imgHeight = getSize().height; imgHeight -= imgHeight % av.charHeight; if (imgHeight < 1) { return; } if (image == null || imgHeight != image.getHeight(this)) { image = createImage(getSize().width, imgHeight); gg = image.getGraphics(); gg.setFont(av.getFont()); } //Fill in the background gg.setColor(Color.white); Font italic = new Font(av.getFont().getName(), Font.ITALIC, av.getFont().getSize()); gg.setFont(italic); gg.fillRect(0, 0, getSize().width, getSize().height); drawIds(av.getStartSeq(), av.endSeq); g.drawImage(image, 0, 0, this); } void drawIds(int starty, int endy) { Color currentColor = Color.white; Color currentTextColor = Color.black; Font italic = new Font(av.getFont().getName(), Font.ITALIC, av.getFont().getSize()); if (av.getWrapAlignment()) { int annotationHeight = 0; AnnotationLabels labels = null; if(av.showAnnotation) { AnnotationPanel ap = new AnnotationPanel(av); annotationHeight = ap.adjustPanelHeight(); labels = new AnnotationLabels(av); } int hgap = av.charHeight; if (av.scaleAboveWrapped) hgap += av.charHeight; int cHeight = av.getAlignment().getHeight() * av.charHeight + hgap + annotationHeight; int rowSize = av.getEndRes() - av.getStartRes(); // Draw the rest of the panels for (int ypos = hgap, row = av.startRes; (ypos <= getSize().height) && (row < av.alignment.getWidth()); ypos += cHeight, row += rowSize) { for (int i = starty; i < av.alignment.getHeight(); i++) { SequenceI s = av.alignment.getSequenceAt(i); drawIdString(gg, s, i, 0, ypos); } if(labels!=null) { gg.setFont(av.getFont()); gg.translate(0, ypos+(av.getAlignment().getHeight() * av.charHeight)); labels.drawComponent(gg, getSize().width); gg.translate(0, -ypos-(av.getAlignment().getHeight() * av.charHeight)); gg.setFont(italic); } } } else { //Now draw the id strings for (int i = starty; i < endy; i++) { // Selected sequence colours if (searchResults != null && searchResults.contains(av.alignment.getSequenceAt(i))) { gg.setColor(Color.black); currentColor = Color.black; currentTextColor = Color.white; } else if (av.getSelectionGroup() != null && av.getSelectionGroup().sequences.contains(av.alignment. getSequenceAt(i))) { currentColor = Color.lightGray; currentTextColor = Color.black; } else { currentColor = av.alignment.getSequenceAt(i).getColor(); currentTextColor = Color.black; } gg.setColor(currentColor); gg.fillRect(0, ((i - starty) * av.charHeight), getSize().width, av.charHeight); gg.setColor(currentTextColor); gg.drawString(av.alignment.getSequenceAt(i) .getDisplayId(av.getShowJVSuffix()), 0, ((i - starty) * av.charHeight) + av.charHeight - (av.charHeight / 5)); } // add a border gg.setColor(Color.white); gg.fillRect(getSize().width - 4, 0, 4, getSize().height); } } public void setHighlighted(java.util.Vector found) { searchResults = found; repaint(); } }