/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
import jalview.datamodel.SequenceGroup;
import jalview.schemes.ColourSchemeI;
import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.Button;
import java.awt.Checkbox;
import java.awt.Color;
import java.awt.FlowLayout;
import java.awt.Frame;
import java.awt.Label;
import java.awt.Panel;
import java.awt.Scrollbar;
import java.awt.TextField;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.AdjustmentEvent;
import java.awt.event.AdjustmentListener;
import java.awt.event.MouseEvent;
import java.awt.event.MouseListener;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
import java.util.Iterator;
public class SliderPanel extends Panel implements ActionListener,
AdjustmentListener, MouseListener
{
AlignmentPanel ap;
boolean forConservation = true;
ColourSchemeI cs;
static Frame conservationSlider;
static Frame PIDSlider;
public static int setConservationSlider(AlignmentPanel ap,
ColourSchemeI cs, String source)
{
SliderPanel sp = null;
if (conservationSlider == null)
{
sp = new SliderPanel(ap, cs.getConservationInc(), true, cs);
conservationSlider = new Frame();
conservationSlider.add(sp);
}
else
{
sp = (SliderPanel) conservationSlider.getComponent(0);
sp.cs = cs;
}
conservationSlider.setTitle(MessageManager.formatMessage("label.conservation_colour_increment", new String[]{source}));
if (ap.av.getAlignment().getGroups() != null)
{
sp.setAllGroupsCheckEnabled(true);
}
else
{
sp.setAllGroupsCheckEnabled(false);
}
return sp.getValue();
}
public static void showConservationSlider()
{
try
{
PIDSlider.setVisible(false);
PIDSlider = null;
} catch (Exception ex)
{
}
if (!conservationSlider.isVisible())
{
jalview.bin.JalviewLite.addFrame(conservationSlider,
conservationSlider.getTitle(), 420, 100);
conservationSlider.addWindowListener(new WindowAdapter()
{
public void windowClosing(WindowEvent e)
{
conservationSlider = null;
}
});
}
}
public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
String source)
{
SliderPanel pid = null;
if (PIDSlider == null)
{
pid = new SliderPanel(ap, 50, false, cs);
PIDSlider = new Frame();
PIDSlider.add(pid);
}
else
{
pid = (SliderPanel) PIDSlider.getComponent(0);
pid.cs = cs;
}
PIDSlider.setTitle(MessageManager.formatMessage("label.percentage_identity_thereshold", new String[]{source}));
if (ap.av.getAlignment().getGroups() != null)
{
pid.setAllGroupsCheckEnabled(true);
}
else
{
pid.setAllGroupsCheckEnabled(false);
}
return pid.getValue();
}
public static void showPIDSlider()
{
try
{
conservationSlider.setVisible(false);
conservationSlider = null;
} catch (Exception ex)
{
}
if (!PIDSlider.isVisible())
{
jalview.bin.JalviewLite.addFrame(PIDSlider, PIDSlider.getTitle(),
420, 100);
PIDSlider.addWindowListener(new WindowAdapter()
{
public void windowClosing(WindowEvent e)
{
PIDSlider = null;
}
});
}
}
public SliderPanel(AlignmentPanel ap, int value, boolean forConserve,
ColourSchemeI cs)
{
try
{
jbInit();
} catch (Exception e)
{
e.printStackTrace();
}
this.ap = ap;
this.cs = cs;
forConservation = forConserve;
undoButton.setVisible(false);
applyButton.setVisible(false);
if (forConservation)
{
label.setText(MessageManager
.getString("label.modify_conservation_visibility"));
slider.setMinimum(0);
slider.setMaximum(50 + slider.getVisibleAmount());
slider.setUnitIncrement(1);
}
else
{
label.setText(MessageManager
.getString("label.colour_residues_above_occurence"));
slider.setMinimum(0);
slider.setMaximum(100 + slider.getVisibleAmount());
slider.setBlockIncrement(1);
}
slider.addAdjustmentListener(this);
slider.addMouseListener(this);
slider.setValue(value);
valueField.setText(value + "");
}
public void valueChanged(int i)
{
if (cs == null)
{
return;
}
ColourSchemeI toChange = cs;
Iterator allGroups = null;
if (allGroupsCheck.getState())
{
allGroups = ap.av.getAlignment().getGroups().listIterator();
}
while (toChange != null)
{
if (forConservation)
{
toChange.setConservationInc(i);
}
else
{
toChange.setThreshold(i, ap.av.isIgnoreGapsConsensus());
}
if (allGroups != null && allGroups.hasNext())
{
while ((toChange = allGroups.next().cs) == null
&& allGroups.hasNext())
{
;
}
}
else
{
toChange = null;
}
}
ap.seqPanel.seqCanvas.repaint();
}
public void setAllGroupsCheckEnabled(boolean b)
{
allGroupsCheck.setEnabled(b);
}
public void actionPerformed(ActionEvent evt)
{
if (evt.getSource() == applyButton)
{
applyButton_actionPerformed();
}
else if (evt.getSource() == undoButton)
{
undoButton_actionPerformed();
}
else if (evt.getSource() == valueField)
{
valueField_actionPerformed();
}
}
public void adjustmentValueChanged(AdjustmentEvent evt)
{
valueField.setText(slider.getValue() + "");
valueChanged(slider.getValue());
}
public void valueField_actionPerformed()
{
try
{
int i = Integer.parseInt(valueField.getText());
slider.setValue(i);
} catch (Exception ex)
{
valueField.setText(slider.getValue() + "");
}
}
public void setValue(int value)
{
slider.setValue(value);
}
public int getValue()
{
return Integer.parseInt(valueField.getText());
}
// this is used for conservation colours, PID colours and redundancy threshold
protected Scrollbar slider = new Scrollbar();
protected TextField valueField = new TextField();
protected Label label = new Label();
Panel jPanel1 = new Panel();
Panel jPanel2 = new Panel();
protected Button applyButton = new Button();
protected Button undoButton = new Button();
FlowLayout flowLayout1 = new FlowLayout();
protected Checkbox allGroupsCheck = new Checkbox();
BorderLayout borderLayout1 = new BorderLayout();
BorderLayout borderLayout2 = new BorderLayout();
FlowLayout flowLayout2 = new FlowLayout();
private void jbInit() throws Exception
{
this.setLayout(borderLayout2);
// slider.setMajorTickSpacing(10);
// slider.setMinorTickSpacing(1);
// slider.setPaintTicks(true);
slider.setBackground(Color.white);
slider.setFont(new java.awt.Font("Verdana", 0, 11));
slider.setOrientation(0);
valueField.setFont(new java.awt.Font("Verdana", 0, 11));
valueField.setText(" ");
valueField.addActionListener(this);
valueField.setColumns(3);
label.setFont(new java.awt.Font("Verdana", 0, 11));
label.setText(MessageManager.getString("label.set_this_label_text"));
jPanel1.setLayout(borderLayout1);
jPanel2.setLayout(flowLayout1);
applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
applyButton.setLabel(MessageManager.getString("action.apply"));
applyButton.addActionListener(this);
undoButton.setEnabled(false);
undoButton.setFont(new java.awt.Font("Verdana", 0, 11));
undoButton.setLabel(MessageManager.getString("action.undo"));
undoButton.addActionListener(this);
allGroupsCheck.setEnabled(false);
allGroupsCheck.setFont(new java.awt.Font("Verdana", 0, 11));
allGroupsCheck.setLabel(MessageManager
.getString("action.apply_threshold_all_groups"));
allGroupsCheck.setName(MessageManager
.getString("action.apply_all_groups"));
this.setBackground(Color.white);
this.setForeground(Color.black);
jPanel2.add(label, null);
jPanel2.add(applyButton, null);
jPanel2.add(undoButton, null);
jPanel2.add(allGroupsCheck);
jPanel1.add(valueField, java.awt.BorderLayout.EAST);
jPanel1.add(slider, java.awt.BorderLayout.CENTER);
this.add(jPanel1, java.awt.BorderLayout.SOUTH);
this.add(jPanel2, java.awt.BorderLayout.CENTER);
}
protected void applyButton_actionPerformed()
{
}
protected void undoButton_actionPerformed()
{
}
public void mousePressed(MouseEvent evt)
{
}
public void mouseReleased(MouseEvent evt)
{
ap.paintAlignment(true);
}
public void mouseClicked(MouseEvent evt)
{
}
public void mouseEntered(MouseEvent evt)
{
}
public void mouseExited(MouseEvent evt)
{
}
}