/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
import jalview.api.FeatureColourI;
import jalview.datamodel.SequenceGroup;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.FeatureColour;
import jalview.schemes.ResidueProperties;
import jalview.schemes.UserColourScheme;
import jalview.util.MessageManager;
import java.awt.Button;
import java.awt.Color;
import java.awt.Component;
import java.awt.Container;
import java.awt.Dialog;
import java.awt.Font;
import java.awt.Frame;
import java.awt.GridLayout;
import java.awt.Label;
import java.awt.Panel;
import java.awt.Rectangle;
import java.awt.Scrollbar;
import java.awt.TextField;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.AdjustmentEvent;
import java.awt.event.AdjustmentListener;
import java.awt.event.FocusEvent;
import java.awt.event.FocusListener;
import java.awt.event.MouseEvent;
import java.util.Vector;
public class UserDefinedColours extends Panel implements ActionListener,
AdjustmentListener, FocusListener
{
AlignmentPanel ap;
SequenceGroup seqGroup;
Button selectedButton;
Vector oldColours = new Vector();
ColourSchemeI oldColourScheme;
Frame frame;
MCview.AppletPDBCanvas pdbcanvas;
AppletJmol jmol;
Dialog dialog;
Object caller;
String originalLabel;
FeatureColourI originalColour;
int R = 0, G = 0, B = 0;
public ColourSchemeI loadDefaultColours()
{
// NOT IMPLEMENTED YET IN APPLET VERSION
return null;
}
public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg)
{
this.ap = ap;
seqGroup = sg;
if (seqGroup != null)
{
oldColourScheme = seqGroup.cs;
}
else
{
oldColourScheme = ap.av.getGlobalColourScheme();
}
init();
}
public UserDefinedColours(MCview.AppletPDBCanvas pdb)
{
this.pdbcanvas = pdb;
init();
}
public UserDefinedColours(AppletJmol jmol)
{
this.jmol = jmol;
init();
}
public UserDefinedColours(FeatureRenderer fr, Frame alignframe)
{
caller = fr;
originalColour = new FeatureColour(fr.colourPanel.getBackground());
originalLabel = "Feature Colour";
setForDialog("Select Feature Colour", alignframe);
setTargetColour(fr.colourPanel.getBackground());
dialog.setVisible(true);
}
public UserDefinedColours(Component caller, Color col1, Frame alignframe)
{
this(caller, col1, alignframe, "Select Colour");
}
/**
* Makes a dialog to choose the colour
*
* @param caller
* - handles events
* @param col
* - original colour
* @param alignframe
* - the parent Frame for the dialog
* @param title
* - window title
*/
public UserDefinedColours(Component caller, Color col, Frame alignframe,
String title)
{
this.caller = caller;
originalColour = new FeatureColour(col);
originalLabel = title;
setForDialog(title, alignframe);
setTargetColour(col);
dialog.setVisible(true);
}
/**
* feature colour chooser
*
* @param caller
* @param label
* @param colour
*/
public UserDefinedColours(Object caller, String label, Color colour)
{
this(caller, label, new FeatureColour(colour), colour);
}
/**
* feature colour chooser when changing style to single color
*
* @param me
* @param type
* @param graduatedColor
*/
public UserDefinedColours(FeatureSettings me, String type,
FeatureColourI graduatedColor)
{
this(me, type, graduatedColor, graduatedColor.getMaxColour());
}
private UserDefinedColours(Object caller, String label,
FeatureColourI ocolour, Color colour)
{
this.caller = caller;
originalColour = ocolour;
originalLabel = label;
init();
remove(buttonPanel);
setTargetColour(colour);
okcancelPanel.setBounds(new Rectangle(0, 113, 400, 35));
frame.setTitle(MessageManager.getString("label.user_defined_colours")
+ " - " + label);
frame.setSize(420, 200);
}
void setForDialog(String title, Container alignframe)
{
init();
frame.setVisible(false);
remove(buttonPanel);
if (alignframe instanceof Frame)
{
dialog = new Dialog((Frame) alignframe, title, true);
}
else
{
// if (alignframe instanceof JVDialog){
// // not 1.1 compatible!
// dialog = new Dialog(((JVDialog)alignframe), title, true);
// } else {
throw new Error(
MessageManager
.getString("label.error_unsupported_owwner_user_colour_scheme"));
}
dialog.add(this);
this.setSize(400, 123);
okcancelPanel.setBounds(new Rectangle(0, 123, 400, 35));
int height = 160 + alignframe.getInsets().top + getInsets().bottom;
int width = 400;
dialog.setBounds(alignframe.getBounds().x
+ (alignframe.getSize().width - width) / 2,
alignframe.getBounds().y
+ (alignframe.getSize().height - height) / 2, width,
height);
}
@Override
public void actionPerformed(ActionEvent evt)
{
final Object source = evt.getSource();
if (source == okButton)
{
okButton_actionPerformed();
}
else if (source == applyButton)
{
applyButton_actionPerformed();
}
else if (source == cancelButton)
{
cancelButton_actionPerformed();
}
else if (source == rText)
{
rText_actionPerformed();
}
else if (source == gText)
{
gText_actionPerformed();
}
else if (source == bText)
{
bText_actionPerformed();
}
}
@Override
public void adjustmentValueChanged(AdjustmentEvent evt)
{
if (evt.getSource() == rScroller)
{
rScroller_adjustmentValueChanged();
}
else if (evt.getSource() == gScroller)
{
gScroller_adjustmentValueChanged();
}
else if (evt.getSource() == bScroller)
{
bScroller_adjustmentValueChanged();
}
}
void init()
{
try
{
jbInit();
} catch (Exception e)
{
e.printStackTrace();
}
frame = new Frame();
frame.add(this);
jalview.bin.JalviewLite.addFrame(frame,
MessageManager.getString("label.user_defined_colours"), 420,
345);
if (seqGroup != null)
{
frame.setTitle(frame.getTitle() + " (" + seqGroup.getName() + ")");
}
for (int i = 0; i < 20; i++)
{
makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i])
+ "", ResidueProperties.aa[i]);
}
makeButton("B", "B");
makeButton("Z", "Z");
makeButton("X", "X");
makeButton("Gap", "'.','-',' '");
validate();
}
protected void rText_actionPerformed()
{
try
{
int i = Integer.parseInt(rText.getText());
rScroller.setValue(i);
rScroller_adjustmentValueChanged();
} catch (NumberFormatException ex)
{
}
}
protected void gText_actionPerformed()
{
try
{
int i = Integer.parseInt(gText.getText());
gScroller.setValue(i);
gScroller_adjustmentValueChanged();
} catch (NumberFormatException ex)
{
}
}
protected void bText_actionPerformed()
{
try
{
int i = Integer.parseInt(bText.getText());
bScroller.setValue(i);
bScroller_adjustmentValueChanged();
} catch (NumberFormatException ex)
{
}
}
protected void rScroller_adjustmentValueChanged()
{
R = rScroller.getValue();
rText.setText(R + "");
colourChanged();
}
protected void gScroller_adjustmentValueChanged()
{
G = gScroller.getValue();
gText.setText(G + "");
colourChanged();
}
protected void bScroller_adjustmentValueChanged()
{
B = bScroller.getValue();
bText.setText(B + "");
colourChanged();
}
public void colourChanged()
{
Color col = new Color(R, G, B);
target.setBackground(col);
target.repaint();
if (selectedButton != null)
{
selectedButton.setBackground(col);
selectedButton.repaint();
}
}
void setTargetColour(Color col)
{
R = col.getRed();
G = col.getGreen();
B = col.getBlue();
rScroller.setValue(R);
gScroller.setValue(G);
bScroller.setValue(B);
rText.setText(R + "");
gText.setText(G + "");
bText.setText(B + "");
colourChanged();
}
public void colourButtonPressed(MouseEvent e)
{
selectedButton = (Button) e.getSource();
setTargetColour(selectedButton.getBackground());
}
void makeButton(String label, String aa)
{
final Button button = new Button();
Color col = Color.white;
if (oldColourScheme != null)
{
try
{
col = oldColourScheme.findColour(aa.charAt(0), -1, null);
} catch (Exception ex)
{
}
}
button.setBackground(col);
oldColours.addElement(col);
button.setLabel(label);
button.setForeground(col.darker().darker().darker());
button.setFont(new java.awt.Font("Verdana", 1, 10));
button.addMouseListener(new java.awt.event.MouseAdapter()
{
@Override
public void mousePressed(MouseEvent e)
{
colourButtonPressed(e);
}
});
buttonPanel.add(button, null);
}
protected void okButton_actionPerformed()
{
applyButton_actionPerformed();
if (dialog != null)
{
dialog.setVisible(false);
}
frame.setVisible(false);
}
public Color getColor()
{
return new Color(R, G, B);
}
protected void applyButton_actionPerformed()
{
if (caller != null)
{
if (caller instanceof FeatureSettings)
{
((FeatureSettings) caller).setUserColour(originalLabel,
new FeatureColour(getColor()));
}
else if (caller instanceof AnnotationColourChooser)
{
if (originalLabel.equals("Min Colour"))
{
((AnnotationColourChooser) caller)
.minColour_actionPerformed(getColor());
}
else
{
((AnnotationColourChooser) caller)
.maxColour_actionPerformed(getColor());
}
}
else if (caller instanceof FeatureRenderer)
{
((FeatureRenderer) caller).colourPanel
.updateColor(new FeatureColour(getColor()));
}
else if (caller instanceof FeatureColourChooser)
{
if (originalLabel.indexOf("inimum") > -1)
{
((FeatureColourChooser) caller)
.minColour_actionPerformed(getColor());
}
else
{
((FeatureColourChooser) caller)
.maxColour_actionPerformed(getColor());
}
}
return;
}
Color[] newColours = new Color[24];
for (int i = 0; i < 24; i++)
{
Button button = (Button) buttonPanel.getComponent(i);
newColours[i] = button.getBackground();
}
UserColourScheme ucs = new UserColourScheme(newColours);
if (ap != null)
{
ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
}
if (ap != null)
{
if (seqGroup != null)
{
seqGroup.cs = ucs;
}
else
{
ap.av.setGlobalColourScheme(ucs);
}
ap.seqPanel.seqCanvas.img = null;
ap.paintAlignment(true);
}
else if (jmol != null)
{
jmol.setJalviewColourScheme(ucs);
}
else if (pdbcanvas != null)
{
pdbcanvas.setColours(ucs);
}
}
protected void cancelButton_actionPerformed()
{
if (caller != null)
{
if (caller instanceof FeatureSettings)
{
((FeatureSettings) caller).setUserColour(originalLabel,
originalColour);
}
else if (caller instanceof AnnotationColourChooser)
{
if (originalLabel.equals("Min Colour"))
{
((AnnotationColourChooser) caller)
.minColour_actionPerformed(originalColour.getColour());
}
else
{
((AnnotationColourChooser) caller)
.maxColour_actionPerformed(originalColour.getColour());
}
}
else if (caller instanceof FeatureRenderer)
{
((FeatureRenderer) caller).colourPanel.updateColor(originalColour);
}
else if (caller instanceof FeatureColourChooser)
{
if (originalLabel.indexOf("inimum") > -1)
{
((FeatureColourChooser) caller)
.minColour_actionPerformed(originalColour.getColour());
}
else
{
((FeatureColourChooser) caller)
.maxColour_actionPerformed(originalColour.getColour());
}
}
if (dialog != null)
{
dialog.setVisible(false);
}
frame.setVisible(false);
return;
}
Color[] newColours = new Color[24];
for (int i = 0; i < 24; i++)
{
newColours[i] = oldColours.elementAt(i);
buttonPanel.getComponent(i).setBackground(newColours[i]);
}
UserColourScheme ucs = new UserColourScheme(newColours);
if (ap != null)
{
if (seqGroup != null)
{
seqGroup.cs = ucs;
}
else
{
ap.av.setGlobalColourScheme(ucs);
}
ap.paintAlignment(true);
}
else if (jmol != null)
{
jmol.setJalviewColourScheme(ucs);
}
else if (pdbcanvas != null)
{
pdbcanvas.pdb.setColours(ucs);
}
frame.setVisible(false);
}
protected Panel buttonPanel = new Panel();
protected GridLayout gridLayout = new GridLayout();
Panel okcancelPanel = new Panel();
protected Button okButton = new Button();
protected Button applyButton = new Button();
protected Button cancelButton = new Button();
protected Scrollbar rScroller = new Scrollbar();
Label label1 = new Label();
protected TextField rText = new TextField();
Label label4 = new Label();
protected Scrollbar gScroller = new Scrollbar();
protected TextField gText = new TextField();
Label label5 = new Label();
protected Scrollbar bScroller = new Scrollbar();
protected TextField bText = new TextField();
protected Panel target = new Panel();
private void jbInit() throws Exception
{
this.setLayout(null);
buttonPanel.setLayout(gridLayout);
gridLayout.setColumns(6);
gridLayout.setRows(4);
okButton.setFont(new java.awt.Font("Verdana", 0, 11));
okButton.setLabel(MessageManager.getString("action.ok"));
okButton.addActionListener(this);
applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
applyButton.setLabel(MessageManager.getString("action.apply"));
applyButton.addActionListener(this);
cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));
cancelButton.setLabel(MessageManager.getString("action.cancel"));
cancelButton.addActionListener(this);
this.setBackground(new Color(212, 208, 223));
okcancelPanel.setBounds(new Rectangle(0, 265, 400, 35));
buttonPanel.setBounds(new Rectangle(0, 123, 400, 142));
rScroller.setMaximum(256);
rScroller.setMinimum(0);
rScroller.setOrientation(0);
rScroller.setUnitIncrement(1);
rScroller.setVisibleAmount(1);
rScroller.setBounds(new Rectangle(36, 27, 119, 19));
rScroller.addAdjustmentListener(this);
label1.setAlignment(Label.RIGHT);
label1.setText("R");
label1.setBounds(new Rectangle(19, 30, 16, 15));
rText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
rText.setText("0 ");
rText.setBounds(new Rectangle(156, 27, 53, 19));
rText.addActionListener(this);
rText.addFocusListener(this);
label4.setAlignment(Label.RIGHT);
label4.setText("G");
label4.setBounds(new Rectangle(15, 56, 20, 15));
gScroller.setMaximum(256);
gScroller.setMinimum(0);
gScroller.setOrientation(0);
gScroller.setUnitIncrement(1);
gScroller.setVisibleAmount(1);
gScroller.setBounds(new Rectangle(35, 52, 120, 20));
gScroller.addAdjustmentListener(this);
gText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
gText.setText("0 ");
gText.setBounds(new Rectangle(156, 52, 53, 20));
gText.addActionListener(this);
gText.addFocusListener(this);
label5.setAlignment(Label.RIGHT);
label5.setText("B");
label5.setBounds(new Rectangle(14, 82, 20, 15));
bScroller.setMaximum(256);
bScroller.setMinimum(0);
bScroller.setOrientation(0);
bScroller.setUnitIncrement(1);
bScroller.setVisibleAmount(1);
bScroller.setBounds(new Rectangle(35, 78, 120, 20));
bScroller.addAdjustmentListener(this);
bText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
bText.setText("0 ");
bText.setBounds(new Rectangle(157, 78, 52, 20));
bText.addActionListener(this);
bText.addFocusListener(this);
target.setBackground(Color.black);
target.setBounds(new Rectangle(229, 26, 134, 79));
this.add(okcancelPanel, null);
okcancelPanel.add(okButton, null);
okcancelPanel.add(applyButton, null);
okcancelPanel.add(cancelButton, null);
this.add(rText);
this.add(gText);
this.add(bText);
this.add(buttonPanel, null);
this.add(target, null);
this.add(gScroller);
this.add(rScroller);
this.add(bScroller);
this.add(label5);
this.add(label4);
this.add(label1);
}
@Override
public void focusGained(FocusEvent e)
{
// noop
}
/**
* This method applies any change to an RGB value if the user tabs out of the
* field instead of pressing Enter
*/
@Override
public void focusLost(FocusEvent e)
{
Component c = e.getComponent();
if (c == rText)
{
rText_actionPerformed();
}
else
{
if (c == gText)
{
gText_actionPerformed();
}
else
{
if (c == bText)
{
bText_actionPerformed();
}
}
}
}
}