package jalview.bin.argparser;

import java.io.File;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;

import jalview.bin.argparser.Arg.Opt;
import jalview.util.FileUtils;

public class BootstrapArgs
{
  // only need one
  private Map<Arg, List<String>> bootstrapArgMap = new HashMap<>();

  private Set<File> argFiles = new HashSet<>();

  public static BootstrapArgs getBootstrapArgs(String[] args)
  {
    List<String> argList = new ArrayList<>(Arrays.asList(args));
    return new BootstrapArgs(argList);
  }

  private BootstrapArgs(List<String> args)
  {
    parse(args, null);
  }

  private void parse(List<String> args, File inArgFile)
  {
    if (args == null)
      return;
    // avoid looping argFiles
    if (inArgFile != null)
    {
      if (argFiles.contains(inArgFile))
      {
        System.err.println(
                "Looped argfiles detected: '" + inArgFile.getPath() + "'");
        return;
      }
      argFiles.add(inArgFile);
    }

    for (int i = 0; i < args.size(); i++)
    {
      String arg = args.get(i);
      String argName = null;
      String val = null;
      if (arg.startsWith(ArgParser.DOUBLEDASH))
      {
        // remove "--"
        arg = arg.substring(ArgParser.DOUBLEDASH.length());
        int equalPos = arg.indexOf(ArgParser.EQUALS);
        if (equalPos > -1
                && ArgParser.argMap.containsKey(arg.substring(0, equalPos)))
        {
          argName = arg.substring(0, equalPos);
          val = arg.substring(equalPos + 1);
        }
        // check for boolean prepended by "no"
        else if (arg.startsWith(ArgParser.NEGATESTRING)
                && ArgParser.argMap.containsKey(
                        arg.substring(ArgParser.NEGATESTRING.length())))
        {
          argName = arg.substring(ArgParser.NEGATESTRING.length());
          val = "false";
        }
        else if (ArgParser.argMap.containsKey(arg))
        {
          argName = arg;
          val = "true";
        }

        Arg a = ArgParser.argMap.get(argName);

        if (a == null || !a.hasOption(Opt.BOOTSTRAP))
        {
          // not a valid bootstrap arg
          continue;
        }

        if (a.hasOption(Opt.STRING))
        {
          List<String> vals = null;
          if (equalPos == -1)
          {
            vals = ArgParser.getShellGlobbedFilenameValues(a, args, i + 1);
          }
          else
          {
            if (a.hasOption(Opt.GLOB))
            {
              vals = FileUtils.getFilenamesFromGlob(val);
            }
            else
            {
              vals = new ArrayList<>();
              vals.add(val);
            }
          }
          addAll(a, vals);

          if (a == Arg.ARGFILE)
          {
            for (String filename : vals)
            {
              File argFile = new File(filename);
              parse(ArgParser.readArgFile(argFile), argFile);
            }
          }
        }
        else
        {
          add(a, val);
        }
      }
    }
  }

  public boolean contains(Arg a)
  {
    return bootstrapArgMap.containsKey(a);
  }

  public List<String> getList(Arg a)
  {
    return bootstrapArgMap.get(a);
  }

  private List<String> getOrCreateList(Arg a)
  {
    List<String> l = getList(a);
    if (l == null)
    {
      l = new ArrayList<>();
      putList(a, l);
    }
    return l;
  }

  private void putList(Arg a, List<String> l)
  {
    bootstrapArgMap.put(a, l);
  }

  /*
   * Creates a new list if not used before,
   * adds the value unless the existing list is non-empty
   * and the arg is not MULTI (so first expressed value is
   * retained).
   */
  private void add(Arg a, String s)
  {
    List<String> l = getOrCreateList(a);
    if (a.hasOption(Opt.MULTI) || l.size() == 0)
    {
      l.add(s);
    }
  }

  private void addAll(Arg a, List<String> al)
  {
    List<String> l = getOrCreateList(a);
    if (a.hasOption(Opt.MULTI))
    {
      l.addAll(al);
    }
    else if (l.size() == 0 && al.size() > 0)
    {
      l.add(al.get(0));
    }
  }

  /*
   * Retrieves the first value even if MULTI.
   * A convenience for non-MULTI args.
   */
  public String get(Arg a)
  {
    if (!bootstrapArgMap.containsKey(a))
      return null;
    List<String> aL = bootstrapArgMap.get(a);
    return (aL == null || aL.size() == 0) ? null : aL.get(0);
  }

  public boolean getBoolean(Arg a, boolean d)
  {
    if (!bootstrapArgMap.containsKey(a))
      return d;
    return Boolean.parseBoolean(get(a));
  }

  public boolean getBoolean(Arg a)
  {
    if (!(a.hasOption(Opt.BOOLEAN) || a.hasOption(Opt.UNARY)))
    {
      return false;
    }
    if (bootstrapArgMap.containsKey(a))
      return Boolean.parseBoolean(get(a));
    else
      return a.getDefaultBoolValue();
  }
}