/*
 * This class was automatically generated with
 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
 * Schema.
 * $Id$
 */
package jalview.binding;

import org.exolab.castor.xml.MarshalException;
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
import org.exolab.castor.xml.ValidationException;

import org.xml.sax.ContentHandler;

//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
import java.io.IOException;
import java.io.Reader;
import java.io.Serializable;
import java.io.Writer;


/**
 * Class Tree.
 *
 * @version $Revision$ $Date$
 */
public class Tree implements java.io.Serializable
{
    //--------------------------/
    //- Class/Member Variables -/
    //--------------------------/

    /**
     * Field _title
     */
    private java.lang.String _title;

    /**
     * Field _currentTree
     */
    private boolean _currentTree;

    /**
     * keeps track of state for field: _currentTree
     */
    private boolean _has_currentTree;

    /**
     * Field _fitToWindow
     */
    private boolean _fitToWindow;

    /**
     * keeps track of state for field: _fitToWindow
     */
    private boolean _has_fitToWindow;

    /**
     * Field _showDistances
     */
    private boolean _showDistances;

    /**
     * keeps track of state for field: _showDistances
     */
    private boolean _has_showDistances;

    /**
     * Field _showBootstrap
     */
    private boolean _showBootstrap;

    /**
     * keeps track of state for field: _showBootstrap
     */
    private boolean _has_showBootstrap;

    /**
     * Field _markUnlinked
     */
    private boolean _markUnlinked;

    /**
     * keeps track of state for field: _markUnlinked
     */
    private boolean _has_markUnlinked;

    /**
     * Field _fontSize
     */
    private int _fontSize;

    /**
     * keeps track of state for field: _fontSize
     */
    private boolean _has_fontSize;

    /**
     * Field _threshold
     */
    private float _threshold;

    /**
     * keeps track of state for field: _threshold
     */
    private boolean _has_threshold;

    /**
     * Field _xpos
     */
    private int _xpos;

    /**
     * keeps track of state for field: _xpos
     */
    private boolean _has_xpos;

    /**
     * Field _ypos
     */
    private int _ypos;

    /**
     * keeps track of state for field: _ypos
     */
    private boolean _has_ypos;

    /**
     * Field _width
     */
    private int _width;

    /**
     * keeps track of state for field: _width
     */
    private boolean _has_width;

    /**
     * Field _height
     */
    private int _height;

    /**
     * keeps track of state for field: _height
     */
    private boolean _has_height;

    /**
     * Field _newick
     */
    private java.lang.String _newick;

    //----------------/
    //- Constructors -/
    //----------------/
    public Tree()
    {
        super();
    }

    //-- jalview.binding.Tree()
    //-----------/

    /**
     * DOCUMENT ME!
     */
    public void deleteCurrentTree()
    {
        this._has_currentTree = false;
    }

    //-- void deleteCurrentTree() 

    /**
     * Method deleteFitToWindow
     *
     */
    public void deleteFitToWindow()
    {
        this._has_fitToWindow = false;
    }

    //-- void deleteFitToWindow() 

    /**
     * Method deleteFontSize
     *
     */
    public void deleteFontSize()
    {
        this._has_fontSize = false;
    }

    //-- void deleteFontSize() 

    /**
     * Method deleteHeight
     *
     */
    public void deleteHeight()
    {
        this._has_height = false;
    }

    //-- void deleteHeight() 

    /**
     * Method deleteMarkUnlinked
     *
     */
    public void deleteMarkUnlinked()
    {
        this._has_markUnlinked = false;
    }

    //-- void deleteMarkUnlinked() 

    /**
     * Method deleteShowBootstrap
     *
     */
    public void deleteShowBootstrap()
    {
        this._has_showBootstrap = false;
    }

    //-- void deleteShowBootstrap() 

    /**
     * Method deleteShowDistances
     *
     */
    public void deleteShowDistances()
    {
        this._has_showDistances = false;
    }

    //-- void deleteShowDistances() 

    /**
     * Method deleteThreshold
     *
     */
    public void deleteThreshold()
    {
        this._has_threshold = false;
    }

    //-- void deleteThreshold() 

    /**
     * Method deleteWidth
     *
     */
    public void deleteWidth()
    {
        this._has_width = false;
    }

    //-- void deleteWidth() 

    /**
     * Method deleteXpos
     *
     */
    public void deleteXpos()
    {
        this._has_xpos = false;
    }

    //-- void deleteXpos() 

    /**
     * Method deleteYpos
     *
     */
    public void deleteYpos()
    {
        this._has_ypos = false;
    }

    //-- void deleteYpos() 

    /**
     * Returns the value of field 'currentTree'.
     *
     * @return boolean
     * @return the value of field 'currentTree'.
     */
    public boolean getCurrentTree()
    {
        return this._currentTree;
    }

    //-- boolean getCurrentTree() 

    /**
     * Returns the value of field 'fitToWindow'.
     *
     * @return boolean
     * @return the value of field 'fitToWindow'.
     */
    public boolean getFitToWindow()
    {
        return this._fitToWindow;
    }

    //-- boolean getFitToWindow() 

    /**
     * Returns the value of field 'fontSize'.
     *
     * @return int
     * @return the value of field 'fontSize'.
     */
    public int getFontSize()
    {
        return this._fontSize;
    }

    //-- int getFontSize() 

    /**
     * Returns the value of field 'height'.
     *
     * @return int
     * @return the value of field 'height'.
     */
    public int getHeight()
    {
        return this._height;
    }

    //-- int getHeight() 

    /**
     * Returns the value of field 'markUnlinked'.
     *
     * @return boolean
     * @return the value of field 'markUnlinked'.
     */
    public boolean getMarkUnlinked()
    {
        return this._markUnlinked;
    }

    //-- boolean getMarkUnlinked() 

    /**
     * Returns the value of field 'newick'.
     *
     * @return String
     * @return the value of field 'newick'.
     */
    public java.lang.String getNewick()
    {
        return this._newick;
    }

    //-- java.lang.String getNewick() 

    /**
     * Returns the value of field 'showBootstrap'.
     *
     * @return boolean
     * @return the value of field 'showBootstrap'.
     */
    public boolean getShowBootstrap()
    {
        return this._showBootstrap;
    }

    //-- boolean getShowBootstrap() 

    /**
     * Returns the value of field 'showDistances'.
     *
     * @return boolean
     * @return the value of field 'showDistances'.
     */
    public boolean getShowDistances()
    {
        return this._showDistances;
    }

    //-- boolean getShowDistances() 

    /**
     * Returns the value of field 'threshold'.
     *
     * @return float
     * @return the value of field 'threshold'.
     */
    public float getThreshold()
    {
        return this._threshold;
    }

    //-- float getThreshold() 

    /**
     * Returns the value of field 'title'.
     *
     * @return String
     * @return the value of field 'title'.
     */
    public java.lang.String getTitle()
    {
        return this._title;
    }

    //-- java.lang.String getTitle() 

    /**
     * Returns the value of field 'width'.
     *
     * @return int
     * @return the value of field 'width'.
     */
    public int getWidth()
    {
        return this._width;
    }

    //-- int getWidth() 

    /**
     * Returns the value of field 'xpos'.
     *
     * @return int
     * @return the value of field 'xpos'.
     */
    public int getXpos()
    {
        return this._xpos;
    }

    //-- int getXpos() 

    /**
     * Returns the value of field 'ypos'.
     *
     * @return int
     * @return the value of field 'ypos'.
     */
    public int getYpos()
    {
        return this._ypos;
    }

    //-- int getYpos() 

    /**
     * Method hasCurrentTree
     *
     *
     *
     * @return boolean
     */
    public boolean hasCurrentTree()
    {
        return this._has_currentTree;
    }

    //-- boolean hasCurrentTree() 

    /**
     * Method hasFitToWindow
     *
     *
     *
     * @return boolean
     */
    public boolean hasFitToWindow()
    {
        return this._has_fitToWindow;
    }

    //-- boolean hasFitToWindow() 

    /**
     * Method hasFontSize
     *
     *
     *
     * @return boolean
     */
    public boolean hasFontSize()
    {
        return this._has_fontSize;
    }

    //-- boolean hasFontSize() 

    /**
     * Method hasHeight
     *
     *
     *
     * @return boolean
     */
    public boolean hasHeight()
    {
        return this._has_height;
    }

    //-- boolean hasHeight() 

    /**
     * Method hasMarkUnlinked
     *
     *
     *
     * @return boolean
     */
    public boolean hasMarkUnlinked()
    {
        return this._has_markUnlinked;
    }

    //-- boolean hasMarkUnlinked() 

    /**
     * Method hasShowBootstrap
     *
     *
     *
     * @return boolean
     */
    public boolean hasShowBootstrap()
    {
        return this._has_showBootstrap;
    }

    //-- boolean hasShowBootstrap() 

    /**
     * Method hasShowDistances
     *
     *
     *
     * @return boolean
     */
    public boolean hasShowDistances()
    {
        return this._has_showDistances;
    }

    //-- boolean hasShowDistances() 

    /**
     * Method hasThreshold
     *
     *
     *
     * @return boolean
     */
    public boolean hasThreshold()
    {
        return this._has_threshold;
    }

    //-- boolean hasThreshold() 

    /**
     * Method hasWidth
     *
     *
     *
     * @return boolean
     */
    public boolean hasWidth()
    {
        return this._has_width;
    }

    //-- boolean hasWidth() 

    /**
     * Method hasXpos
     *
     *
     *
     * @return boolean
     */
    public boolean hasXpos()
    {
        return this._has_xpos;
    }

    //-- boolean hasXpos() 

    /**
     * Method hasYpos
     *
     *
     *
     * @return boolean
     */
    public boolean hasYpos()
    {
        return this._has_ypos;
    }

    //-- boolean hasYpos() 

    /**
     * Method isValid
     *
     *
     *
     * @return boolean
     */
    public boolean isValid()
    {
        try
        {
            validate();
        }
        catch (org.exolab.castor.xml.ValidationException vex)
        {
            return false;
        }

        return true;
    }

    //-- boolean isValid() 

    /**
     * Method marshal
     *
     *
     *
     * @param out
     */
    public void marshal(java.io.Writer out)
        throws org.exolab.castor.xml.MarshalException, 
            org.exolab.castor.xml.ValidationException
    {
        Marshaller.marshal(this, out);
    }

    //-- void marshal(java.io.Writer) 

    /**
     * Method marshal
     *
     *
     *
     * @param handler
     */
    public void marshal(org.xml.sax.ContentHandler handler)
        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
            org.exolab.castor.xml.ValidationException
    {
        Marshaller.marshal(this, handler);
    }

    //-- void marshal(org.xml.sax.ContentHandler) 

    /**
     * Sets the value of field 'currentTree'.
     *
     * @param currentTree the value of field 'currentTree'.
     */
    public void setCurrentTree(boolean currentTree)
    {
        this._currentTree = currentTree;
        this._has_currentTree = true;
    }

    //-- void setCurrentTree(boolean) 

    /**
     * Sets the value of field 'fitToWindow'.
     *
     * @param fitToWindow the value of field 'fitToWindow'.
     */
    public void setFitToWindow(boolean fitToWindow)
    {
        this._fitToWindow = fitToWindow;
        this._has_fitToWindow = true;
    }

    //-- void setFitToWindow(boolean) 

    /**
     * Sets the value of field 'fontSize'.
     *
     * @param fontSize the value of field 'fontSize'.
     */
    public void setFontSize(int fontSize)
    {
        this._fontSize = fontSize;
        this._has_fontSize = true;
    }

    //-- void setFontSize(int) 

    /**
     * Sets the value of field 'height'.
     *
     * @param height the value of field 'height'.
     */
    public void setHeight(int height)
    {
        this._height = height;
        this._has_height = true;
    }

    //-- void setHeight(int) 

    /**
     * Sets the value of field 'markUnlinked'.
     *
     * @param markUnlinked the value of field 'markUnlinked'.
     */
    public void setMarkUnlinked(boolean markUnlinked)
    {
        this._markUnlinked = markUnlinked;
        this._has_markUnlinked = true;
    }

    //-- void setMarkUnlinked(boolean) 

    /**
     * Sets the value of field 'newick'.
     *
     * @param newick the value of field 'newick'.
     */
    public void setNewick(java.lang.String newick)
    {
        this._newick = newick;
    }

    //-- void setNewick(java.lang.String) 

    /**
     * Sets the value of field 'showBootstrap'.
     *
     * @param showBootstrap the value of field 'showBootstrap'.
     */
    public void setShowBootstrap(boolean showBootstrap)
    {
        this._showBootstrap = showBootstrap;
        this._has_showBootstrap = true;
    }

    //-- void setShowBootstrap(boolean) 

    /**
     * Sets the value of field 'showDistances'.
     *
     * @param showDistances the value of field 'showDistances'.
     */
    public void setShowDistances(boolean showDistances)
    {
        this._showDistances = showDistances;
        this._has_showDistances = true;
    }

    //-- void setShowDistances(boolean) 

    /**
     * Sets the value of field 'threshold'.
     *
     * @param threshold the value of field 'threshold'.
     */
    public void setThreshold(float threshold)
    {
        this._threshold = threshold;
        this._has_threshold = true;
    }

    //-- void setThreshold(float) 

    /**
     * Sets the value of field 'title'.
     *
     * @param title the value of field 'title'.
     */
    public void setTitle(java.lang.String title)
    {
        this._title = title;
    }

    //-- void setTitle(java.lang.String) 

    /**
     * Sets the value of field 'width'.
     *
     * @param width the value of field 'width'.
     */
    public void setWidth(int width)
    {
        this._width = width;
        this._has_width = true;
    }

    //-- void setWidth(int) 

    /**
     * Sets the value of field 'xpos'.
     *
     * @param xpos the value of field 'xpos'.
     */
    public void setXpos(int xpos)
    {
        this._xpos = xpos;
        this._has_xpos = true;
    }

    //-- void setXpos(int) 

    /**
     * Sets the value of field 'ypos'.
     *
     * @param ypos the value of field 'ypos'.
     */
    public void setYpos(int ypos)
    {
        this._ypos = ypos;
        this._has_ypos = true;
    }

    //-- void setYpos(int) 

    /**
     * Method unmarshal
     *
     *
     *
     * @param reader
     * @return Object
     */
    public static java.lang.Object unmarshal(java.io.Reader reader)
        throws org.exolab.castor.xml.MarshalException, 
            org.exolab.castor.xml.ValidationException
    {
        return (jalview.binding.Tree) Unmarshaller.unmarshal(jalview.binding.Tree.class,
            reader);
    }

    //-- java.lang.Object unmarshal(java.io.Reader) 

    /**
     * Method validate
     *
     */
    public void validate() throws org.exolab.castor.xml.ValidationException
    {
        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
        validator.validate(this);
    }

    //-- void validate() 
}