/*
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.datamodel;
public interface AnnotatedCollectionI extends SequenceCollectionI
{
/**
* TODO: decide if null is a valid response if there is no annotation on the
* object
*
* @return null
*/
AlignmentAnnotation[] getAlignmentAnnotation();
Iterable findAnnotation(String calcId);
/**
* context for this annotated collection
* @return null or the collection upon which this collection is defined (e.g. alignment, parent group).
*/
AnnotatedCollectionI getContext();
}