/*
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.datamodel;
import fr.orsay.lri.varna.models.rna.RNA;
public class SecondaryStructureAnnotation extends AlignmentAnnotation
{
private static RNA _rna = null;
public SecondaryStructureAnnotation (RNA rna)
{
super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
_rna = rna;
}
public RNA getRNA()
{
return _rna;
}
public static Annotation[] getAnnotation(RNA rna)
{
Annotation[] ann = new Annotation[rna.getSize()];
for(int i=0;i