package jalview.datamodel;

import fr.orsay.lri.varna.models.rna.RNA;

public class SecondaryStructureAnnotation extends AlignmentAnnotation
{
	

	private static RNA _rna = null;
	  public SecondaryStructureAnnotation (RNA rna) 
	  {
		 super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
		 
	    
	    _rna = rna;
	  }
	
	  public RNA getRNA()
	 {
		  return _rna;
	 }
	  public static Annotation[] getAnnotation(RNA rna) 
	  {
		  Annotation[] ann =  new Annotation[rna.getSize()];
			 for(int i=0;i<ann.length;i++)
			 {	
				 ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);; 
			 }
		  return ann;
	  }
}