/*
* Jalview - A Sequence Alignment Editor and Viewer
* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
*/
package jalview.datamodel;

import jalview.analysis.*;

import jalview.datamodel.*;

import jalview.schemes.*;

import java.util.*;


public class SuperGroup {
    String groupName;
    boolean displayBoxes;
    boolean displayText;
    boolean colourText;
    public ColourSchemeI cs;
    Vector sequenceGroups = new Vector();

    public SuperGroup() {
        groupName = "Super group";
        this.displayBoxes = true;
        this.displayText = true;
        this.colourText = false;
        cs = null;
    }

    public SuperGroup(String groupName, ColourSchemeI scheme,
        boolean displayBoxes, boolean displayText, boolean colourText) {
        this.groupName = groupName;
        this.displayBoxes = displayBoxes;
        this.displayText = displayText;
        this.colourText = colourText;
        this.cs = scheme;
    }

    public String getName() {
        return groupName;
    }

    public void setName(String name) {
        groupName = name;
    }

    public void addGroup(SequenceGroup sg) {
        if (!sequenceGroups.contains(sg)) {
            sequenceGroups.addElement(sg);
        }
    }

    public void addOrRemove(SequenceGroup sg) {
        if (sequenceGroups.contains(sg)) {
            deleteGroup(sg);
        } else {
            addGroup(sg);
        }
    }

    public void deleteGroup(SequenceGroup sg) {
        sequenceGroups.removeElement(sg);
    }

    public void setSuperGroupProperties(SequenceGroup sg) {
        cs = sg.cs;
        colourText = sg.colourText;
        displayText = sg.displayText;
        displayBoxes = sg.displayBoxes;

        for (int i = 0; i < sequenceGroups.size(); i++) {
            SequenceGroup temp = (SequenceGroup) sequenceGroups.elementAt(i);
            temp.cs = sg.cs;
            temp.colourText = sg.colourText;
            temp.displayText = sg.displayText;
            temp.displayBoxes = sg.displayBoxes;
        }
    }

    public int getSize() {
        return sequenceGroups.size();
    }

    public SequenceGroup getGroupeAt(int i) {
        return (SequenceGroup) sequenceGroups.elementAt(i);
    }
}