package jalview.ext.archaeopteryx;

import jalview.analysis.TreeBuilder;
import jalview.gui.Desktop;

import java.awt.Dimension;

import org.forester.archaeopteryx.Archaeopteryx;
import org.forester.archaeopteryx.MainFrame;
import org.forester.phylogeny.Phylogeny;

public final class ArchaeopteryxInit
{
  public static MainFrame createInstance(Phylogeny[] aptxTrees)
  {
    return createBoundAptxFrame(aptxTrees);

  }

  public static MainFrame createInstance(Phylogeny aptxTree)
  {
    Phylogeny[] aptxTrees = { aptxTree }; // future possibility to load in
    // several trees simultaneously
    return createBoundAptxFrame(aptxTrees);

  }

  public static MainFrame createInstance(
          TreeBuilder calculatedTree)
  {
    ArchaeopteryxTreeBuilder aptxTreeBuilder = new ArchaeopteryxTreeBuilder();
    Phylogeny aptxTree = aptxTreeBuilder.buildAptxTree(calculatedTree);
    Phylogeny[] aptxTrees = { aptxTree }; // future possibility to load in
                                          // several trees simultaneously

    return createBoundAptxFrame(aptxTrees);

  }


  private static MainFrame createBoundAptxFrame(Phylogeny[] aptxTrees)
  {
    MainFrame aptxApp = Archaeopteryx.createApplication(aptxTrees,
            "_aptx_jalview_configuration_file", null);
    return bindFrameToJalview(aptxApp);
  }



  private static MainFrame bindFrameToJalview(MainFrame aptxApp)
  {
    int width = 400;
    int height = 550;
    aptxApp.setMinimumSize(new Dimension(width, height));

    Desktop.addInternalFrame(aptxApp, "Archaeopteryx Tree View", true,
            width, height, true, true);

    return aptxApp;

  }


}