package jalview.ext.archaeopteryx;

import jalview.math.MatrixI;

import org.forester.evoinference.matrix.distance.DistanceMatrix;

public class ForesterMatrix implements DistanceMatrix
{
  private MatrixI jalviewMatrix;

  public ForesterMatrix(MatrixI jalviewInputMatrix)
  {
    this.jalviewMatrix = jalviewInputMatrix;

  }

  @Override
  public String getIdentifier(int i)
  {
    // TODO Auto-generated method stub
    return null;
  }

  @Override
  public int getIndex(String identifier)
  {
    return 0;
  }

  @Override
  public int getSize()
  {
    return 0;
  }

  @Override
  public double getValue(int col, int row)
  {
    return jalviewMatrix.getValue(row, col);
  }

  @Override
  public void setIdentifier(int i, String identifier)
  {
    // TODO Auto-generated method stub

  }

  @Override
  public void setValue(int col, int row, double distance)
  {
    jalviewMatrix.setValue(row, col, distance);

  }

  @Override
  public StringBuffer toStringBuffer(Format format)
  {
    // TODO Auto-generated method stub
    return null;
  }

  @Override
  public double[][] getValues()
  {
    // TODO Auto-generated method stub
    return null;
  }

}