/* * Jalview - A Sequence Alignment Editor and Viewer * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.gui; import java.awt.*; import java.awt.event.*; import java.awt.image.*; import javax.swing.*; /** * DOCUMENT ME! * * @author $author$ * @version $Revision$ */ public class OverviewPanel extends JPanel implements Runnable { BufferedImage miniMe; AlignViewport av; AlignmentPanel ap; float scalew = 1f; float scaleh = 1f; int width; int sequencesHeight; int graphHeight = 30; int boxX = -1; int boxY = -1; int boxWidth = -1; int boxHeight = -1; boolean resizing = false; /** * Creates a new OverviewPanel object. * * @param ap DOCUMENT ME! */ public OverviewPanel(AlignmentPanel ap) { this.av = ap.av; this.ap = ap; setLayout(null); // scale the initial size of overviewpanel to shape of alignment float initialScale = (float) av.alignment.getWidth() / (float) av.alignment.getHeight(); if (av.alignment.getWidth() > av.alignment.getHeight()) { // wider width = 400; sequencesHeight = (int) (400f / initialScale); } else { // taller width = (int) (400f * initialScale); sequencesHeight = 300; if (width < 120) { width = 120; } } addComponentListener(new ComponentAdapter() { public void componentResized(ComponentEvent evt) { if ((getWidth() != width) || (getHeight() != (sequencesHeight + graphHeight))) { updateOverviewImage(); } } }); addMouseMotionListener(new MouseMotionAdapter() { public void mouseDragged(MouseEvent evt) { doMouseDragged(evt); } }); addMouseListener(new MouseAdapter() { public void mousePressed(MouseEvent evt) { doMousePressed(evt); } public void mouseReleased(MouseEvent evt) { doMouseReleased(evt); } }); updateOverviewImage(); } /** * DOCUMENT ME! * * @param evt DOCUMENT ME! */ public void doMousePressed(MouseEvent evt) { boxX = evt.getX(); boxY = evt.getY(); checkValid(); repaint(); } /** * DOCUMENT ME! * * @param evt DOCUMENT ME! */ public void doMouseReleased(MouseEvent evt) { boxX = evt.getX(); boxY = evt.getY(); checkValid(); if (!resizing) { ap.setScrollValues((int) (boxX / scalew / av.getCharWidth()), (int) (boxY / scaleh / av.getCharHeight())); } } /** * DOCUMENT ME! * * @param evt DOCUMENT ME! */ public void doMouseDragged(MouseEvent evt) { boxX = evt.getX(); boxY = evt.getY(); checkValid(); if (!resizing) { ap.setScrollValues((int) (boxX / scalew / av.getCharWidth()), (int) (boxY / scaleh / av.getCharHeight())); } } /** * DOCUMENT ME! */ void checkValid() { if (boxY < 0) { boxY = 0; } if (boxY > (sequencesHeight - boxHeight)) { boxY = sequencesHeight - boxHeight + 1; } if (boxX < 0) { boxX = 0; } if (boxX > (width - boxWidth)) { boxX = width - boxWidth; } } /** * DOCUMENT ME! */ public void updateOverviewImage() { if (resizing) { return; } resizing = true; Thread thread = new Thread(this); thread.start(); repaint(); } /** * DOCUMENT ME! */ public void run() { miniMe = null; int alwidth = av.alignment.getWidth(); int alheight = av.alignment.getHeight(); if ((getWidth() > 0) && (getHeight() > 0)) { width = getWidth(); sequencesHeight = getHeight() - graphHeight; } setPreferredSize(new Dimension(width, sequencesHeight + graphHeight)); int fullsizeWidth = alwidth * av.getCharWidth(); int fullsizeHeight = alheight * av.getCharHeight(); scalew = (float) width / (float) fullsizeWidth; scaleh = (float) sequencesHeight / (float) fullsizeHeight; miniMe = new BufferedImage(width, sequencesHeight + graphHeight, BufferedImage.TYPE_INT_RGB); Graphics mg = miniMe.getGraphics(); BufferedImage consensus = new BufferedImage(fullsizeWidth, 60, BufferedImage.TYPE_3BYTE_BGR); Graphics g = consensus.getGraphics(); ap.annotationPanel.drawGraph(g, av.conservation, fullsizeWidth, 60); mg.drawImage(consensus, 0, sequencesHeight, width, sequencesHeight + graphHeight, 0, 0, fullsizeWidth, 60, this); boolean oldRenderGaps = av.renderGaps; try { // We'll have to draw the full size alignment in chunks, as an image of the // whole alignment requires too much memory // Max size depends on the font size, the following is a // guess at a size which works int maxSize = 2000 / av.getFont().getSize(); BufferedImage block; int blockx = 0; int blocky = 0; int blockw = 0; int blockh = 0; int eRes = 0; int eSeq = 0; av.setRenderGaps(false); for (int sRes = 0, chunkx = 0; sRes < alwidth; sRes += maxSize, chunkx++) { eSeq = 0; eRes += maxSize; if (eRes > alwidth) { eRes = alwidth; } for (int sSeq = 0, chunky = 0; sSeq < alheight; sSeq += maxSize, chunky++) { eSeq += maxSize; if (eSeq > alheight) { eSeq = alheight; } blocky = 0; blockx = (int) ((float) sRes / (float) alwidth * width); block = new BufferedImage((eRes - sRes) * av.charWidth, (eSeq - sSeq) * av.charHeight, BufferedImage.TYPE_3BYTE_BGR); g = block.getGraphics(); ap.seqPanel.seqCanvas.drawPanel(g, sRes, eRes, sSeq, eSeq, sRes, sSeq, 0); blockh = (int) ((float) (eSeq - sSeq) / (float) alheight * sequencesHeight) + 1; blockw = (int) ((float) (eRes - sRes) / (float) alwidth * width) + 1; blocky += (int) ((float) sSeq / (float) alheight * sequencesHeight); mg.drawImage(block, blockx, blocky, blockx + blockw, blocky + blockh, 0, 0, block.getWidth(), block.getHeight(), this); block = null; } } } catch (OutOfMemoryError error) { System.err.println( "Out of memory when trying to calculate the overview window image!"); } av.setRenderGaps(oldRenderGaps); resizing = false; setBoxPosition(); } /** * DOCUMENT ME! */ public void setBoxPosition() { boxX = (int) (av.getStartRes() * av.getCharWidth() * scalew); boxY = (int) (av.getStartSeq() * av.getCharHeight() * scaleh); boxWidth = (int) ((av.getEndRes() - av.getStartRes() + 1) * av.getCharWidth() * scalew); boxHeight = (int) (av.getEndSeq() * av.getCharHeight() * scaleh) - boxY; repaint(); } /** * DOCUMENT ME! * * @param g DOCUMENT ME! */ public void paintComponent(Graphics g) { g.setColor(Color.white); g.fillRect(0, 0, getWidth(), getHeight()); g.setColor(Color.black); if (resizing) { g.setFont(new Font("Verdana", Font.BOLD, 15)); g.drawString("Recalculating", 5, sequencesHeight / 2); g.drawString("Overview.....", 5, (sequencesHeight / 2) + 20); } else { if (miniMe != null) { g.drawImage(miniMe, 0, 0, this); } g.setColor(Color.red); g.drawRect(boxX, boxY, boxWidth, boxHeight); g.drawRect(boxX + 1, boxY + 1, boxWidth - 2, boxHeight - 2); } } }