/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.renderer.ScaleRenderer;
import jalview.renderer.ScaleRenderer.ScaleMark;
import jalview.util.MessageManager;
import jalview.util.Platform;
import jalview.viewmodel.ViewportListenerI;
import jalview.viewmodel.ViewportRanges;
import java.awt.Color;
import java.awt.FontMetrics;
import java.awt.Graphics;
import java.awt.Graphics2D;
import java.awt.RenderingHints;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.MouseEvent;
import java.awt.event.MouseListener;
import java.awt.event.MouseMotionListener;
import java.beans.PropertyChangeEvent;
import java.util.List;
import javax.swing.JMenuItem;
import javax.swing.JPanel;
import javax.swing.JPopupMenu;
import javax.swing.SwingUtilities;
import javax.swing.ToolTipManager;
/**
* The panel containing the sequence ruler (when not in wrapped mode), and
* supports a range of mouse operations to select, hide or reveal columns.
*/
public class ScalePanel extends JPanel
implements MouseMotionListener, MouseListener, ViewportListenerI
{
protected int offy = 4;
public int width;
protected AlignViewport av;
AlignmentPanel ap;
boolean stretchingGroup = false;
/*
* min, max hold the extent of a mouse drag action
*/
int min;
int max;
boolean mouseDragging = false;
/*
* holds a hidden column range when the mouse is over an adjacent column
*/
int[] reveal;
/**
* Constructor
*
* @param av
* @param ap
*/
public ScalePanel(AlignViewport av, AlignmentPanel ap)
{
this.av = av;
this.ap = ap;
addMouseListener(this);
addMouseMotionListener(this);
av.getRanges().addPropertyChangeListener(this);
}
/**
* DOCUMENT ME!
*
* @param evt
* DOCUMENT ME!
*/
@Override
public void mousePressed(MouseEvent evt)
{
int x = (evt.getX() / av.getCharWidth()) + av.getRanges().getStartRes();
final int res;
if (av.hasHiddenColumns())
{
x = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(x);
}
if (x >= av.getAlignment().getWidth())
{
res = av.getAlignment().getWidth() - 1;
}
else
{
res = x;
}
min = res;
max = res;
if (evt.isPopupTrigger()) // Mac: mousePressed
{
rightMouseButtonPressed(evt, res);
}
else if (SwingUtilities.isRightMouseButton(evt) && !Platform.isAMac())
{
/*
* defer right-mouse click handling to mouse up on Windows
* (where isPopupTrigger() will answer true)
* but accept Cmd-click on Mac which passes isRightMouseButton
*/
return;
}
else
{
leftMouseButtonPressed(evt, res);
}
}
/**
* Handles right mouse button press. If pressed in a selected column, opens
* context menu for 'Hide Columns'. If pressed on a hidden columns marker,
* opens context menu for 'Reveal / Reveal All'. Else does nothing.
*
* @param evt
* @param res
*/
protected void rightMouseButtonPressed(MouseEvent evt, final int res)
{
JPopupMenu pop = new JPopupMenu();
if (reveal != null)
{
JMenuItem item = new JMenuItem(
MessageManager.getString("label.reveal"));
item.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
av.showColumn(reveal[0]);
reveal = null;
ap.paintAlignment(true, true);
av.sendSelection();
}
});
pop.add(item);
if (av.getAlignment().getHiddenColumns().hasHiddenColumns())
{
item = new JMenuItem(MessageManager.getString("action.reveal_all"));
item.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
av.showAllHiddenColumns();
reveal = null;
ap.paintAlignment(true, true);
av.sendSelection();
}
});
pop.add(item);
}
pop.show(this, evt.getX(), evt.getY());
}
else if (av.getColumnSelection().contains(res))
{
JMenuItem item = new JMenuItem(
MessageManager.getString("label.hide_columns"));
item.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
{
av.hideColumns(res, res);
if (av.getSelectionGroup() != null && av.getSelectionGroup()
.getSize() == av.getAlignment().getHeight())
{
av.setSelectionGroup(null);
}
ap.paintAlignment(true, true);
av.sendSelection();
}
});
pop.add(item);
pop.show(this, evt.getX(), evt.getY());
}
}
/**
* Handles left mouse button press
*
* @param evt
* @param res
*/
protected void leftMouseButtonPressed(MouseEvent evt, final int res)
{
/*
* Ctrl-click/Cmd-click adds to the selection
* Shift-click extends the selection
*/
// TODO Problem: right-click on Windows not reported until mouseReleased?!?
if (!Platform.isControlDown(evt) && !evt.isShiftDown())
{
av.getColumnSelection().clear();
}
av.getColumnSelection().addElement(res);
SequenceGroup sg = new SequenceGroup();
// try to be as quick as possible
SequenceI[] iVec = av.getAlignment().getSequencesArray();
for (int i = 0; i < iVec.length; i++)
{
sg.addSequence(iVec[i], false);
iVec[i] = null;
}
iVec = null;
sg.setStartRes(res);
sg.setEndRes(res);
if (evt.isShiftDown())
{
int min = Math.min(av.getColumnSelection().getMin(), res);
int max = Math.max(av.getColumnSelection().getMax(), res);
for (int i = min; i < max; i++)
{
av.getColumnSelection().addElement(i);
}
sg.setStartRes(min);
sg.setEndRes(max);
}
av.setSelectionGroup(sg);
ap.paintAlignment(false, false);
av.sendSelection();
}
/**
* DOCUMENT ME!
*
* @param evt
* DOCUMENT ME!
*/
@Override
public void mouseReleased(MouseEvent evt)
{
mouseDragging = false;
int res = (evt.getX() / av.getCharWidth())
+ av.getRanges().getStartRes();
if (av.hasHiddenColumns())
{
res = av.getAlignment().getHiddenColumns()
.adjustForHiddenColumns(res);
}
if (res >= av.getAlignment().getWidth())
{
res = av.getAlignment().getWidth() - 1;
}
if (!stretchingGroup)
{
if (evt.isPopupTrigger()) // Windows: mouseReleased
{
rightMouseButtonPressed(evt, res);
}
else
{
ap.paintAlignment(false, false);
}
return;
}
SequenceGroup sg = av.getSelectionGroup();
if (sg != null)
{
if (res > sg.getStartRes())
{
sg.setEndRes(res);
}
else if (res < sg.getStartRes())
{
sg.setStartRes(res);
}
}
stretchingGroup = false;
ap.paintAlignment(false, false);
av.sendSelection();
}
/**
* Action on dragging the mouse in the scale panel is to expand or shrink the
* selection group range (including any hidden columns that it spans)
*
* @param evt
*/
@Override
public void mouseDragged(MouseEvent evt)
{
mouseDragging = true;
ColumnSelection cs = av.getColumnSelection();
HiddenColumns hidden = av.getAlignment().getHiddenColumns();
int res = (evt.getX() / av.getCharWidth())
+ av.getRanges().getStartRes();
res = Math.max(0, res);
res = hidden.adjustForHiddenColumns(res);
res = Math.min(res, av.getAlignment().getWidth() - 1);
min = Math.min(res, min);
max = Math.max(res, max);
SequenceGroup sg = av.getSelectionGroup();
if (sg != null)
{
stretchingGroup = true;
cs.stretchGroup(res, sg, min, max);
ap.paintAlignment(false, false);
}
}
@Override
public void mouseEntered(MouseEvent evt)
{
if (mouseDragging)
{
ap.getSeqPanel().scrollCanvas(null);
}
}
@Override
public void mouseExited(MouseEvent evt)
{
if (mouseDragging)
{
ap.getSeqPanel().scrollCanvas(evt);
}
}
@Override
public void mouseClicked(MouseEvent evt)
{
}
/**
* Creates a tooltip when the mouse is over a hidden columns marker
*/
@Override
public void mouseMoved(MouseEvent evt)
{
this.setToolTipText(null);
reveal = null;
if (!av.hasHiddenColumns())
{
return;
}
int res = (evt.getX() / av.getCharWidth())
+ av.getRanges().getStartRes();
reveal = av.getAlignment().getHiddenColumns()
.getRegionWithEdgeAtRes(res);
res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(res);
ToolTipManager.sharedInstance().registerComponent(this);
this.setToolTipText(
MessageManager.getString("label.reveal_hidden_columns"));
repaint();
}
/**
* DOCUMENT ME!
*
* @param g
* DOCUMENT ME!
*/
@Override
public void paintComponent(Graphics g)
{
/*
* shouldn't get called in wrapped mode as the scale above is
* drawn instead by SeqCanvas.drawNorthScale
*/
if (!av.getWrapAlignment())
{
drawScale(g, av.getRanges().getStartRes(), av.getRanges().getEndRes(),
getWidth(), getHeight());
}
}
// scalewidth will normally be screenwidth,
public void drawScale(Graphics g, int startx, int endx, int width,
int height)
{
Graphics2D gg = (Graphics2D) g;
gg.setFont(av.getFont());
if (av.antiAlias)
{
gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,
RenderingHints.VALUE_ANTIALIAS_ON);
}
// Fill in the background
gg.setColor(Color.white);
gg.fillRect(0, 0, width, height);
gg.setColor(Color.black);
// Fill the selected columns
ColumnSelection cs = av.getColumnSelection();
HiddenColumns hidden = av.getAlignment().getHiddenColumns();
int avCharWidth = av.getCharWidth();
int avCharHeight = av.getCharHeight();
if (cs != null)
{
gg.setColor(new Color(220, 0, 0));
for (int sel : cs.getSelected())
{
// TODO: JAL-2001 - provide a fast method to list visible selected in a
// given range
if (av.hasHiddenColumns())
{
if (hidden.isVisible(sel))
{
sel = hidden.findColumnPosition(sel);
}
else
{
continue;
}
}
if ((sel >= startx) && (sel <= endx))
{
gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth,
getHeight());
}
}
}
int widthx = 1 + endx - startx;
FontMetrics fm = gg.getFontMetrics(av.getFont());
int y = avCharHeight;
int yOf = fm.getDescent();
y -= yOf;
if (av.hasHiddenColumns())
{
// draw any hidden column markers
gg.setColor(Color.blue);
int res;
if (av.getShowHiddenMarkers())
{
List positions = hidden.findHiddenRegionPositions();
for (int pos : positions)
{
res = pos - startx;
if (res < 0 || res > widthx)
{
continue;
}
gg.fillPolygon(
new int[]
{ -1 + res * avCharWidth - avCharHeight / 4,
-1 + res * avCharWidth + avCharHeight / 4,
-1 + res * avCharWidth },
new int[]
{ y, y, y + 2 * yOf }, 3);
}
}
}
// Draw the scale numbers
gg.setColor(Color.black);
int maxX = 0;
List marks = new ScaleRenderer().calculateMarks(av, startx,
endx);
for (ScaleMark mark : marks)
{
boolean major = mark.major;
int mpos = mark.column; // (i - startx - 1)
String mstring = mark.text;
if (mstring != null)
{
if (mpos * avCharWidth > maxX)
{
gg.drawString(mstring, mpos * avCharWidth, y);
maxX = (mpos + 2) * avCharWidth + fm.stringWidth(mstring);
}
}
if (major)
{
gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + 2,
(mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2));
}
else
{
gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + yOf,
(mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2));
}
}
}
@Override
public void propertyChange(PropertyChangeEvent evt)
{
// Respond to viewport change events (e.g. alignment panel was scrolled)
// Both scrolling and resizing change viewport ranges: scrolling changes
// both start and end points, but resize only changes end values.
// Here we only want to fastpaint on a scroll, with resize using a normal
// paint, so scroll events are identified as changes to the horizontal or
// vertical start value.
if (evt.getPropertyName().equals(ViewportRanges.STARTRES)
|| evt.getPropertyName().equals(ViewportRanges.STARTRESANDSEQ)
|| evt.getPropertyName().equals(ViewportRanges.MOVE_VIEWPORT))
{
// scroll event, repaint panel
repaint();
}
}
}